Large nucleotide-dependent conformational change in Rab28

FEBS Lett. 2008 Dec 10;582(29):4107-11. doi: 10.1016/j.febslet.2008.11.008. Epub 2008 Nov 19.

Abstract

Rab GTPases are essential regulators of membrane trafficking. We report crystal structures of Rab28 in the active (GppNHp-bound) and inactive (GDP-3'P-bound) forms at 1.5 and 1.1A resolution. Rab28 is a distant member of the Rab family. While the overall fold of Rab28 resembles that of other Rab GTPases, it undergoes a larger nucleotide-dependent conformational change than other members of this family. Added flexibility resulting from a double-glycine motif at the beginning of switch 2 might partially account for this observation. The double-glycine motif, which is conserved in the Arf family, only occurs in Rab28 and Rab7B of the Rab family, and may have a profound effect on their catalytic activities.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Crystallography, X-Ray
  • Guanosine Diphosphate / chemistry*
  • Guanylyl Imidodiphosphate / chemistry*
  • Humans
  • Protein Conformation
  • rab GTP-Binding Proteins / chemistry*

Substances

  • Guanosine Diphosphate
  • Guanylyl Imidodiphosphate
  • RAB28 protein, human
  • rab GTP-Binding Proteins