Confounding effects in "A six-gene signature predicting breast cancer lung metastasis"

Cancer Res. 2009 Sep 15;69(18):7480-5. doi: 10.1158/0008-5472.CAN-08-3350. Epub 2009 Sep 1.

Abstract

The majority of breast cancer deaths result from metastases rather than from direct effects of the primary tumor itself. Recently, Landemaine and colleagues described a six-gene signature purported to predict lung metastasis risk. They analyzed gene expression in 23 metastases from breast cancer patients (5 lung, 18 non-lung) identifying a 21-gene signature. Expression of 16 of these was analyzed in primary breast tumors from 72 patients with known outcome, and six were selected that were predictive of lung metastases: DSC2, TFCP2L1, UGT8, ITGB8, ANP32E, and FERMT1. Despite the value of such a signature, our analysis indicates that this analysis ignored potentially important confounding factors and that their signature is instead a surrogate for molecular subtype.

Publication types

  • Comment
  • Letter
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Breast Neoplasms / genetics*
  • Breast Neoplasms / pathology*
  • Cluster Analysis
  • Female
  • Gene Expression Profiling
  • Genetic Predisposition to Disease
  • Humans
  • Lung Neoplasms / genetics*
  • Lung Neoplasms / secondary*
  • Oligonucleotide Array Sequence Analysis