Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors

Cell Mol Life Sci. 2010 Mar;67(5):677-700. doi: 10.1007/s00018-009-0177-1. Epub 2009 Oct 27.

Abstract

Nonsense-mediated decay is well known by the lucid definition of being a RNA surveillance mechanism that ensures the speedy degradation of mRNAs containing premature translation termination codons. However, as we review here, NMD is far from being a simple quality control mechanism; it also regulates the stability of many wild-type transcripts. We summarise the abundance of research that has characterised each of the NMD factors and present a unified model for the recognition of NMD substrates. The contentious issue of how and where NMD occurs is also discussed, particularly with regard to P-bodies and SMG6-driven endonucleolytic degradation. In recent years, the discovery of additional functions played by several of the NMD factors has further complicated the picture. Therefore, we also review the reported roles of UPF1, SMG1 and SMG6 in other cellular processes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Biomechanical Phenomena
  • Cells / metabolism*
  • Codon, Nonsense / metabolism*
  • Disease / etiology
  • Disease / genetics
  • Humans
  • Models, Biological
  • Quality Control
  • RNA Processing, Post-Transcriptional / physiology*
  • RNA Stability / genetics*
  • RNA Stability / physiology
  • Trans-Activators / genetics
  • Trans-Activators / metabolism
  • Trans-Activators / physiology
  • Transcription Factors / metabolism
  • Transcription Factors / physiology*

Substances

  • Codon, Nonsense
  • NMD-F protein, human
  • Trans-Activators
  • Transcription Factors