tRNA-dependent pre-transfer editing by prokaryotic leucyl-tRNA synthetase

J Biol Chem. 2010 Jan 29;285(5):3235-44. doi: 10.1074/jbc.M109.060616. Epub 2009 Nov 23.

Abstract

To prevent genetic code ambiguity due to misincorporation of amino acids into proteins, aminoacyl-tRNA synthetases have evolved editing activities to eliminate intermediate or final non-cognate products. In this work we studied the different editing pathways of class Ia leucyl-tRNA synthetase (LeuRS). Different mutations and experimental conditions were used to decipher the editing mechanism, including the recently developed compound AN2690 that targets the post-transfer editing site of LeuRS. The study emphasizes the crucial importance of tRNA for the pre- and post-transfer editing catalysis. Both reactions have comparable efficiencies in prokaryotic Aquifex aeolicus and Escherichia coli LeuRSs, although the E. coli enzyme favors post-transfer editing, whereas the A. aeolicus enzyme favors pre-transfer editing. Our results also indicate that the entry of the CCA-acceptor end of tRNA in the editing domain is strictly required for tRNA-dependent pre-transfer editing. Surprisingly, this editing reaction was resistant to AN2690, which inactivates the enzyme by forming a covalent adduct with tRNA(Leu) in the post-transfer editing site. Taken together, these data suggest that the binding of tRNA in the post-transfer editing conformation confers to the enzyme the capacity for pre-transfer editing catalysis, regardless of its capacity to catalyze post-transfer editing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacteria / enzymology*
  • Binding Sites
  • Catalysis
  • Escherichia coli / enzymology*
  • Kinetics
  • Leucine-tRNA Ligase / chemistry*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation
  • RNA Editing
  • RNA, Transfer / chemistry*
  • RNA, Transfer, Amino Acyl / chemistry*
  • Sequence Homology, Amino Acid
  • Tryptophan / chemistry

Substances

  • RNA, Transfer, Amino Acyl
  • Tryptophan
  • RNA, Transfer
  • Leucine-tRNA Ligase