ATP-dependent MurE ligase in Mycobacterium tuberculosis: biochemical and structural characterisation

Tuberculosis (Edinb). 2010 Jan;90(1):16-24. doi: 10.1016/j.tube.2009.10.007. Epub 2009 Nov 27.

Abstract

New therapies are required against Mycobacterium tuberculosis and its cell wall peptidoglycan biosynthesis is a potential therapeutic target. UDP-MurNAc-tripeptide ligase (MurE) is a member of the ATP-dependent ligase family, which incorporate amino acids including meso-diaminopimelic acid (m-DAP) into peptidoglycan during synthesis in a species-specific manner. In the present study, we have cloned, over-expressed, and characterised MurE from M. tuberculosis (Mtb-MurE). The crystal structure has been determined at 3.0A resolution in the presence of the substrate UDP-MurNAc-l-Ala-d-Glu (UAG). The activity of the enzyme was measured through estimating inorganic phosphate released in a non-radioactive high-throughput colourimetric assay. UDP-MurNAc-l-Ala-d-Glu-m-DAP (UMT) formation coupled to inorganic phosphate release was confirmed by HPLC and mass spectrometric analyses. Kinetic constants were determined for a range of natural substrates using optimised conditions. From our findings, it is evident that Mtb-MurE is highly specific in adding m-DAP to UDP-MurNAc-dipeptide and ATP-hydrolysis is an absolute requirement for its activity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / genetics
  • Adenosine Triphosphate / metabolism*
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Cell Wall / genetics*
  • Cell Wall / metabolism
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Humans
  • Mycobacterium tuberculosis / genetics*
  • Peptide Synthases / genetics*
  • Peptide Synthases / metabolism
  • Peptidoglycan / biosynthesis
  • Peptidoglycan / genetics*
  • Tuberculosis / enzymology
  • Tuberculosis / metabolism*
  • Up-Regulation

Substances

  • Bacterial Proteins
  • Peptidoglycan
  • Adenosine Triphosphate
  • Peptide Synthases
  • MurE protein, Mycobacterium tuberculosis

Associated data

  • PDB/2WTZ