Prevalence of intrinsic disorder in the hepatitis C virus ARFP/Core+1/S protein

FEBS J. 2010 Feb;277(3):774-89. doi: 10.1111/j.1742-4658.2009.07527.x. Epub 2010 Jan 7.

Abstract

The hepatitis C virus (HCV) Core+1/S polypeptide, also known as alternative reading frame protein (ARFP)/S, is an ARFP expressed from the Core coding region of the viral genome. Core+1/S is expressed as a result of internal initiation at AUG codons (85-87) located downstream of the polyprotein initiator codon, and corresponds to the C-terminal part of most ARFPs. Core+1/S is a highly basic polypeptide, and its function still remains unclear. In this work, untagged recombinant Core+1/S was expressed and purified from Escherichia coli in native conditions, and was shown to react with sera of HCV-positive patients. We subsequently undertook the biochemical and biophysical characterization of Core+1/S. The conformation and oligomeric state of Core+1/S were investigated using size exclusion chromatography, dynamic light scattering, fluorescence, CD, and NMR. Consistent with sequence-based disorder predictions, Core+1/S lacks significant secondary structure in vitro, which might be relevant for the recognition of diverse molecular partners and/or for the assembly of Core+1/S. This study is the first reported structural characterization of an HCV ARFP/Core+1 protein, and provides evidence that ARFP/Core+1/S is highly disordered under native conditions, with a tendency for self-association.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Circular Dichroism
  • Cloning, Molecular
  • Hepacivirus / genetics*
  • Hepatitis C / immunology
  • Hot Temperature
  • Humans
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Polyproteins / genetics
  • Protein Denaturation
  • Sequence Alignment
  • Spectrometry, Fluorescence
  • Viral Core Proteins / chemistry
  • Viral Core Proteins / genetics*
  • Viral Core Proteins / immunology

Substances

  • Polyproteins
  • Viral Core Proteins
  • hepatitis C protein F, Hepatitis C virus