Aminoacyl transfer rate dictates choice of editing pathway in threonyl-tRNA synthetase

J Biol Chem. 2010 Jul 30;285(31):23810-7. doi: 10.1074/jbc.M110.105320. Epub 2010 May 26.

Abstract

Aminoacyl-tRNA synthetases hydrolyze aminoacyl adenylates and aminoacyl-tRNAs formed from near-cognate amino acids, thereby increasing translational fidelity. The contributions of pre- and post-transfer editing pathways to the fidelity of Escherichia coli threonyl-tRNA synthetase (ThrRS) were investigated by rapid kinetics. In the pre-steady state, asymmetric activation of cognate threonine and noncognate serine was observed in the active sites of dimeric ThrRS, with similar rates of activation. In the absence of tRNA, seryl-adenylate was hydrolyzed 29-fold faster by the ThrRS catalytic domain than threonyl-adenylate. The rate of seryl transfer to cognate tRNA was only 2-fold slower than threonine. Experiments comparing the rate of ATP consumption to the rate of aminoacyl-tRNA(AA) formation demonstrated that pre-transfer hydrolysis contributes to proofreading only when the rate of transfer is slowed significantly. Thus, the relative contributions of pre- and post-transfer editing in ThrRS are subject to modulation by the rate of aminoacyl transfer.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adenosine Triphosphate / chemistry
  • Binding Sites
  • Catalytic Domain
  • Escherichia coli / enzymology*
  • Hydrolysis
  • Kinetics
  • Models, Biological
  • Models, Chemical
  • Models, Genetic
  • RNA Editing*
  • RNA, Transfer, Amino Acyl / chemistry*
  • Serine / chemistry
  • Solvents / chemistry
  • Threonine / chemistry

Substances

  • RNA, Transfer, Amino Acyl
  • Solvents
  • Threonine
  • Serine
  • Adenosine Triphosphate