13915*G DNA polymorphism associated with lactase persistence in Africa interacts with Oct-1

Hum Genet. 2011 Jan;129(1):111-3. doi: 10.1007/s00439-010-0898-0. Epub 2010 Oct 20.

Abstract

Lactase gene expression declines with aging (lactase non-persistence) in the majority of humans worldwide. Lactase persistence is a heritable autosomal dominant condition and has been strongly correlated with several single nucleotide polymorphisms (SNPs) located ~14-kb upstream (-13907, -13910 and -13915) of the lactase gene in different ethnic populations. In contrast to the -13907*G and -13910*T SNPs, the -13915*G SNP was previously believed not to interact with Oct-1. In the present study, however, Oct-1 is shown to interact with the -13915*G SNP region DNA sequence by EMSAs and gel supershift. In addition, Oct-1 is capable of enhancing promoter activity of a lactase promoter-reporter construct harboring the 13915*G SNP sequence in cell culture. Oct-1 binding to the -13907 to -13915 SNP region therefore remains a candidate interaction involved in lactase persistence.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Africa
  • Base Sequence
  • Electrophoretic Mobility Shift Assay
  • Epistasis, Genetic
  • Gene Expression Regulation, Enzymologic*
  • Humans
  • Lactase / genetics*
  • Lactose / metabolism*
  • Lactose Intolerance / genetics*
  • Octamer Transcription Factor-1 / genetics*
  • Octamer Transcription Factor-1 / metabolism
  • Polymorphism, Single Nucleotide*
  • Promoter Regions, Genetic

Substances

  • Octamer Transcription Factor-1
  • Lactase
  • Lactose