Assays for hypermethylation of the BRCA1 gene promoter in tumor cells to predict sensitivity to PARP-inhibitor therapy

Methods Mol Biol. 2011:780:277-91. doi: 10.1007/978-1-61779-270-0_17.

Abstract

The breast cancer 1 and 2, early onset (BRCA1 and BRCA2) genes are important for double-strand break repair by homologous recombination. Cells with inactivating mutations of the BRCA1 or BRCA2 tumor suppressor genes show increased sensitivity to Poly-ADP ribose polymerase (PARP)-inhibitors in vitro. Sporadic breast tumors with BRCA1 promoter hypermethylation show a similar phenotype to familial BRCA1 patient tumors termed "BRCAness." Sporadic ovarian tumors with functional inactivation of BRCA1 by hypermethylation will also have the BRCA-deficiency phenocopy. The loss of BRCA1 expression associated with promoter hypermethylation will disrupt BRCA-associated DNA repair and may sensitize tumors to BRCA-directed therapies. Thus, the determination of methylation status of BRCA1 may be an important predictive classifier of response to PARP-inhibitor therapy. The methylation, and thereby functional, status of other genes implicated in the wider BRCA/homologous recombination (HR) pathway may also be relevant to the prediction of response to PARP-inhibitor therapy. Here, we describe the four optimal technologies for assaying the promoter methylation status of BRCA1 and/or other genes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antineoplastic Agents / therapeutic use*
  • BRCA1 Protein / genetics*
  • DNA Methylation / genetics*
  • Enzyme Inhibitors / therapeutic use*
  • Humans
  • In Vitro Techniques
  • Neoplasms / drug therapy*
  • Neoplasms / genetics*
  • Poly(ADP-ribose) Polymerase Inhibitors*
  • Polymerase Chain Reaction
  • Promoter Regions, Genetic / genetics*

Substances

  • Antineoplastic Agents
  • BRCA1 Protein
  • Enzyme Inhibitors
  • Poly(ADP-ribose) Polymerase Inhibitors