Obtain osteoarthritis related molecular signature genes through regulation network

Mol Med Rep. 2012 Jan;5(1):177-83. doi: 10.3892/mmr.2011.595. Epub 2011 Sep 22.

Abstract

Osteoarthritis (OA), also known as degenerative joint disease or osteoarthrosis, is the most common form of arthritis. OA occurs when cartilage in the joints wears down over time. We used the GSE1919 series to identify potential genes that correlated to OA. The aim of our study was to obtain a molecular signature of OA through the regulation network based on differentially expressed genes. From the result of regulation network construction in OA, a number of transcription factors (TFs) and pathways closely related to OA were linked by our method. Peroxisome proliferator-activated receptor γ also arises as hub nodes in our transcriptome network and certain TFs containing CEBPD, EGR2 and ETS2 were shown to be related to OA by a previous study.

MeSH terms

  • Databases, Genetic
  • Gene Regulatory Networks*
  • Humans
  • Osteoarthritis / genetics*
  • PPAR gamma / genetics
  • PPAR gamma / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcriptome

Substances

  • PPAR gamma
  • Transcription Factors