Genotyping for cytokine polymorphisms in a Northern Ivory Coast population reveals a high frequency of the heterozygote genotypes for the TNF-α-308G/A SNP

Int J Immunogenet. 2012 Aug;39(4):291-5. doi: 10.1111/j.1744-313X.2012.01086.x. Epub 2012 Feb 2.

Abstract

Cytokine polymorphisms influence the outcomes of parasitic diseases and vary among populations because of their different evolutionary histories and selective pressures imposed by host-pathogen interactions. In this frame, we investigated the frequencies of TNF-α (-308G/A), TGF-β(1) (codon 10C/T, codon 25C/G) and IL-10 (-1082A/G) SNPs in 133 individuals from Ouangolodougou, a rural village in Northern Ivory Coast, where malaria and other parasitic diseases are endemic. The SNPs alleles were determined by ARMS-PCR methodology. Allele frequencies of the SNPs investigated were as follows: IL 10 -1082G = 0.741 and -1082A = 0.259; TGF-β(1) Codon 10 C = 0.835 and T = 0.165; TGF-β(1) Codon 25 G = 0.782 and C = 0.218. For the TNF-α gene, we found high frequencies of the -308A allele (0.305) and heterozygote genotypes (0.594), with a consequent deviation from the Hardy-Weinberg equilibrium. The high heterozygosity at the TNF-α locus suggests a possible selective advantage of the heterozygote genomes, associated with intermediate levels of TNF-α expression, against the infectious agents endemic in Western Africa.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Alleles
  • Child
  • Child, Preschool
  • Codon / genetics
  • Cote d'Ivoire
  • Female
  • Gene Frequency*
  • Genetic Predisposition to Disease
  • Genetics, Population / methods
  • Genome, Human
  • Genotyping Techniques
  • Heterozygote*
  • Homozygote
  • Humans
  • Interleukin-10 / genetics
  • Male
  • Middle Aged
  • Polymorphism, Single Nucleotide*
  • Selection, Genetic
  • Transforming Growth Factor beta1 / genetics
  • Tumor Necrosis Factor-alpha / genetics*
  • Young Adult

Substances

  • Codon
  • IL10 protein, human
  • Transforming Growth Factor beta1
  • Tumor Necrosis Factor-alpha
  • Interleukin-10