The VNTR polymorphism of the DC-SIGNR gene and susceptibility to HIV-1 infection: a meta-analysis

PLoS One. 2012;7(9):e42972. doi: 10.1371/journal.pone.0042972. Epub 2012 Sep 5.

Abstract

Background: Dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin related (DC-SIGNR) can bind to the human immunodeficiency virus-1 (HIV-1) gp120 envelope glycoprotein and is thus important for the host-pathogen interaction in HIV-1 infection. Studies of the association between the variable number tandem repeat (VNTR) polymorphism of the DC-SIGNR gene and HIV-1 susceptibility have produced controversial results.

Methods and findings: We conducted a meta-analysis of the data contained in the literature to clarify these findings. In total, 10 studies consisting of 2683 HIV-1 patients and 3263 controls (2130 healthy controls and 1133 HIV-1 exposed but seronegative (HESN) controls) were included. Odds ratios (ORs) with 95% confidence intervals (95% CIs) were assessed in the main analyses. Further stratified analyses by ethnicity and sample size were performed. By dividing the controls into two groups, healthy controls and HIV-1 exposed but seronegative (HESN) controls, we explored different genetic models to detect any association between the VNTR polymorphism and predisposition to HIV-1 infection. The results showed that the 5-repeat allele carriers (OR = 0.84, 95% CI = 0.73-0.96) and the 5/5 homozygous (OR = 0.68, 95% CI = 0.50-0.93) had significantly reduced risk when using the HIV-1 exposed but seronegative (HESN) as controls. The stratified analyses by ethnicity and sample size confirmed these findings. However, a low to moderate degree of heterogeneity was also found across studies.

Conclusions: Our findings demonstrate that the VNTR polymorphism of the DC-SIGNR gene is associated with a moderate effect on host susceptibility to HIV-1 infection. Similar to the 32-bp deletion in the chemokine receptor-5 gene (CCR5Δ32), the DC-SIGNR VNTR 5-repeat allele might have a role in resistance to HIV infection, particularly in Asian populations.

Publication types

  • Meta-Analysis
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa
  • Alleles
  • Asia
  • Case-Control Studies
  • Cell Adhesion Molecules / genetics*
  • Europe
  • Gene Deletion
  • Genetic Predisposition to Disease
  • Genotype
  • HIV Infections / genetics*
  • HIV Infections / virology*
  • Humans
  • Lectins, C-Type / genetics*
  • Minisatellite Repeats*
  • Models, Statistical
  • Polymorphism, Genetic*
  • Receptors, CCR5 / genetics
  • Receptors, Cell Surface / genetics*
  • United States
  • env Gene Products, Human Immunodeficiency Virus / metabolism

Substances

  • CLEC4M protein, human
  • Cell Adhesion Molecules
  • Lectins, C-Type
  • Receptors, CCR5
  • Receptors, Cell Surface
  • env Gene Products, Human Immunodeficiency Virus

Grants and funding

This work was supported by grants from the National Natural Science Foundation of China (31000955, 30900812 and 90919007) and the fund from Science & Technology of Southeast University (KJ2010439 and KJ2010437). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.