Inverse correlation of miRNA and cell cycle-associated genes suggests influence of miRNA on benign thyroid nodule tumorigenesis

J Clin Endocrinol Metab. 2013 Jan;98(1):E8-16. doi: 10.1210/jc.2012-2564. Epub 2012 Nov 8.

Abstract

Context: The molecular etiology of cold and benign thyroid nodules (CBTNs) is largely unknown. Increased thyroid epithelial cell proliferation is a hallmark of CBTNs. MicroRNAs (miRNAs) are prominent regulators of cell proliferation.

Objective: Our objective was to assess the influence of miRNAs on the increased proliferation and thus the molecular etiology of CBTNs.

Design: By using microarrays, we defined the molecular pattern of increased proliferation of CBTNs as a differential expression of cell-cycle-associated genes and miRNAs. In silico integration of differentially expressed miRNAs and mRNAs showed an inverse correlation between the expression of 59 miRNAs and 133 mRNAs. Inverse correlations between cell-cycle-associated genes such as CDKN1C and miR-221, CCND1 and miR-31, GADD45A and miR-130b, or CDKN1A and let-7f suggest a modulation of proliferation in CBTNs by miRNAs. Their expression was validated using quantitative RT-PCR and functionally characterized in cell line models.

Results: Comparative quantitative RT-PCR of 20 samples of CBTNs and their surrounding tissue revealed an 11-fold down-regulation of miR-31 with a 2.6-fold up-regulation of CCND1, and a 2.6-fold up-regulation of miR-130b with a 2.3-fold down-regulation of its target GADD45A. Using HTori and FTC-133 cell lines, we analyzed proliferation, cell cycle, and apoptosis after transfection of miRNA-31 and miRNA-130b mimic and inhibitors. Overexpression of miR-31 and the resultant down-regulation of CCND1 led to an arrest in the cell cycle phase G1. Overexpression of miR-130b led to an increase of apoptosis and necrosis within 72 h.

Conclusion: miR-31 and miR-130b may have an effect on tumorigenesis of CBTNs by regulating proliferation and apoptosis and the cell cycle through cyclin D1.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma, Follicular / genetics
  • Adenocarcinoma, Follicular / pathology
  • Cell Line, Tumor
  • Cell Transformation, Neoplastic / genetics*
  • Epistasis, Genetic
  • Gene Expression Regulation, Neoplastic
  • Genes, bcl-1 / physiology
  • Genes, cdc* / genetics
  • Genes, cdc* / physiology
  • Humans
  • MicroRNAs / genetics*
  • MicroRNAs / physiology
  • RNA, Messenger / genetics
  • Thyroid Neoplasms / genetics
  • Thyroid Neoplasms / pathology
  • Thyroid Nodule / genetics*
  • Thyroid Nodule / pathology*
  • Transcriptome
  • Validation Studies as Topic

Substances

  • MIRN130 microRNA, human
  • MIRN31 microRNA, human
  • MicroRNAs
  • RNA, Messenger