Single ABCA3 mutations increase risk for neonatal respiratory distress syndrome

Pediatrics. 2012 Dec;130(6):e1575-82. doi: 10.1542/peds.2012-0918. Epub 2012 Nov 19.

Abstract

Background and objective: Neonatal respiratory distress syndrome (RDS) due to pulmonary surfactant deficiency is heritable, but common variants do not fully explain disease heritability.

Methods: Using next-generation, pooled sequencing of race-stratified DNA samples from infants ≥34 weeks' gestation with and without RDS (n = 513) and from a Missouri population-based cohort (n = 1066), we scanned all exons of 5 surfactant-associated genes and used in silico algorithms to identify functional mutations. We validated each mutation with an independent genotyping platform and compared race-stratified, collapsed frequencies of rare mutations by gene to investigate disease associations and estimate attributable risk.

Results: Single ABCA3 mutations were overrepresented among European-descent RDS infants (14.3% of RDS vs 3.7% of non-RDS; P = .002) but were not statistically overrepresented among African-descent RDS infants (4.5% of RDS vs 1.5% of non-RDS; P = .23). In the Missouri population-based cohort, 3.6% of European-descent and 1.5% of African-descent infants carried a single ABCA3 mutation. We found no mutations among the RDS infants and no evidence of contribution to population-based disease burden for SFTPC, CHPT1, LPCAT1, or PCYT1B.

Conclusions: In contrast to lethal neonatal RDS resulting from homozygous or compound heterozygous ABCA3 mutations, single ABCA3 mutations are overrepresented among European-descent infants ≥34 weeks' gestation with RDS and account for ~10.9% of the attributable risk among term and late preterm infants. Although ABCA3 mutations are individually rare, they are collectively common among European- and African-descent individuals in the general population.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 1-Acylglycerophosphocholine O-Acyltransferase / genetics
  • ATP-Binding Cassette Transporters / genetics*
  • Black or African American / genetics
  • Choline-Phosphate Cytidylyltransferase / genetics
  • Cohort Studies
  • Diacylglycerol Cholinephosphotransferase / genetics
  • Exome / genetics
  • Gene Expression Regulation / genetics
  • Genetic Association Studies
  • Genetic Predisposition to Disease / ethnology
  • Genetic Predisposition to Disease / genetics*
  • Gestational Age
  • Heterozygote
  • Homozygote
  • Humans
  • Infant, Newborn
  • Mutation*
  • Pulmonary Surfactant-Associated Protein C / genetics
  • Respiratory Distress Syndrome, Newborn / ethnology
  • Respiratory Distress Syndrome, Newborn / genetics*
  • Risk
  • White People / genetics

Substances

  • ABCA3 protein, human
  • ATP-Binding Cassette Transporters
  • Pulmonary Surfactant-Associated Protein C
  • SFTPC protein, human
  • 1-Acylglycerophosphocholine O-Acyltransferase
  • Lpcat1 protein, human
  • Choline-Phosphate Cytidylyltransferase
  • PCYT1B protein, human
  • Diacylglycerol Cholinephosphotransferase