Allelic combinations of immune-response genes as possible composite markers of IFN-β efficacy in multiple sclerosis patients

Pharmacogenomics. 2012 Nov;13(15):1689-700. doi: 10.2217/pgs.12.161.

Abstract

Background: IFN-β is widely used as the first-line disease-modifying treatment for multiple sclerosis. However, 30-50% of multiple sclerosis patients do not respond to this therapy. Identification of genetic variants and their combinations that predict responsiveness to IFN-β could be useful for treatment prognosis.

Materials & methods: The combinations of alleles of nine polymorphic loci in immune-response genes were analyzed in 253 Russian multiple sclerosis patients as possible determinants of clinically optimal IFN-β treatment response using APSampler software.

Results: Carriage of TGFB1*-509C and CCR5*d was associated with favorable IFN-β response by itself. CCR5*d, IFNAR1*16725G, IFNG*874T and IFNB1*153T/T were the components of the combinations, associated with clinically optimal response to IFN-β. Carriage of composite markers (CCR5*d + IFNAR1*G + IFNB1*T/T) or (CCR5*d + IFNAR1*G + IFNG*T) is beneficial for IFN-β treatment efficacy.

Discussion: The data obtained provides evidence of the cumulative effect of immune-response genes on IFN-β treatment efficacy. This joint contribution may reflect the additive effect of independent allelic variants and epistatic interactions between some of them.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles*
  • Gene Frequency / immunology
  • Genetic Loci / immunology
  • Genotype
  • Humans
  • Interferon-beta / immunology*
  • Interferon-beta / therapeutic use*
  • Multiple Sclerosis / drug therapy*
  • Multiple Sclerosis / genetics*
  • Multiple Sclerosis / immunology
  • Polymorphism, Single Nucleotide / immunology
  • Receptor, Interferon alpha-beta / genetics
  • Receptor, Interferon alpha-beta / immunology
  • Receptors, CCR5 / genetics
  • Receptors, CCR5 / immunology
  • Transforming Growth Factor beta1 / genetics
  • Transforming Growth Factor beta1 / immunology

Substances

  • IFNAR1 protein, human
  • Receptors, CCR5
  • TGFB1 protein, human
  • Transforming Growth Factor beta1
  • Receptor, Interferon alpha-beta
  • Interferon-beta