Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1

Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1652-7. doi: 10.1073/pnas.1218528110. Epub 2013 Jan 14.

Abstract

The human sensor of double-stranded RNA (dsRNA) oligoadenylate synthetase 1 (hOAS1) polymerizes ATP into 2',5'-linked iso-RNA (2-5A) involved in innate immunity, cell cycle, and differentiation. We report the crystal structure of hOAS1 in complex with dsRNA and 2'-deoxy ATP at 2.7 Å resolution, which reveals the mechanism of cytoplasmic dsRNA recognition and activation of oligoadenylate synthetases. Human OAS1 recognizes dsRNA using a previously uncharacterized protein/RNA interface that forms via a conformational change induced by binding of dsRNA. The protein/RNA interface involves two minor grooves and has no sequence-specific contacts, with the exception of a single hydrogen bond between the -NH(2) group of nucleobase G17 and the carbonyl oxygen of serine 56. Using a biochemical readout, we show that hOAS1 undergoes more than 20,000-fold activation upon dsRNA binding and that canonical or GU-wobble substitutions produce dsRNA mutants that retain either full or partial activity, in agreement with the crystal structure. Ultimately, the binding of dsRNA promotes an elaborate conformational rearrangement in the N-terminal lobe of hOAS1, which brings residues D75, D77, and D148 into proximity and creates coordination geometry for binding of two catalytic Mg(2+) ions and ATP. The assembly of this critical active-site structure provides the gate that couples binding of dsRNA to the production and downstream functions of 2-5A.

MeSH terms

  • 2',5'-Oligoadenylate Synthetase / chemistry*
  • 2',5'-Oligoadenylate Synthetase / metabolism
  • Adenine Nucleotides / chemistry
  • Adenine Nucleotides / metabolism
  • Amino Acid Sequence
  • Base Sequence
  • Binding Sites / genetics
  • Biocatalysis
  • Crystallography, X-Ray
  • Cytosol / metabolism
  • Deoxyadenine Nucleotides / chemistry
  • Deoxyadenine Nucleotides / metabolism
  • Enzyme Activation
  • Humans
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation*
  • Oligoribonucleotides / chemistry
  • Oligoribonucleotides / metabolism
  • Protein Binding
  • Protein Structure, Tertiary*
  • RNA, Double-Stranded / chemistry*
  • RNA, Double-Stranded / metabolism
  • Sequence Homology, Amino Acid
  • Substrate Specificity

Substances

  • Adenine Nucleotides
  • Deoxyadenine Nucleotides
  • Oligoribonucleotides
  • RNA, Double-Stranded
  • 2',5'-oligoadenylate
  • OAS1 protein, human
  • 2',5'-Oligoadenylate Synthetase
  • 2'-deoxyadenosine triphosphate

Associated data

  • PDB/4IG8