Protein-DNA interactions upstream from the human A gamma globin gene

Nucleic Acids Res. 1990 Apr 25;18(8):1977-82. doi: 10.1093/nar/18.8.1977.

Abstract

We have used DNAase I footprinting and the gel mobility shift assay to study proteins which bind to promoter elements located between -140 and -382 upstream of the human A gamma globin gene. Footprints are found with both erythroid and nonerythroid nuclear extracts at three sites: from -294 to -264, -242 to -227, and -189 to -172 from the transcription initiation site. An erythroid-specific footprint is identified from -194 to -189. We demonstrate that two known transcription factors, the ubiquitous octamer-binding protein OTF-1 and the erythroid regulatory factor NFE-1, bind to the -194 to -172 region and that their footprints overlap. Binding of OTF-1 to this region is reduced by a mutation at -175 associated with a form of non-deletion hereditary persistence of fetal hemoglobin. We conclude that OTF-1 may compete with NFE-1 for the -175 binding site, possibly functioning as a repressor of gamma globin transcription.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Binding Sites
  • Binding, Competitive
  • Cell Line
  • DNA / genetics
  • DNA / metabolism*
  • DNA-Binding Proteins / metabolism*
  • Deoxyribonuclease I / metabolism
  • Erythroid-Specific DNA-Binding Factors
  • GATA1 Transcription Factor
  • Globins / genetics*
  • Host Cell Factor C1
  • Humans
  • Leukemia, Erythroblastic, Acute / genetics
  • Molecular Sequence Data
  • Mutation
  • Octamer Transcription Factor-1
  • Promoter Regions, Genetic*
  • Transcription Factors / metabolism*
  • Tumor Cells, Cultured

Substances

  • DNA-Binding Proteins
  • Erythroid-Specific DNA-Binding Factors
  • GATA1 Transcription Factor
  • HCFC1 protein, human
  • Host Cell Factor C1
  • Octamer Transcription Factor-1
  • POU2F1 protein, human
  • Transcription Factors
  • Globins
  • DNA
  • Deoxyribonuclease I