Diagnosis of mitochondrial disorders by concomitant next-generation sequencing of the exome and mitochondrial genome

Genomics. 2013 Sep;102(3):148-56. doi: 10.1016/j.ygeno.2013.04.013. Epub 2013 Apr 28.

Abstract

Mitochondrial diseases are notoriously difficult to diagnose due to extreme locus and allelic heterogeneity, with both nuclear and mitochondrial genomes potentially liable. Using exome sequencing we demonstrate the ability to rapidly and cost effectively evaluate both the nuclear and mitochondrial genomes to obtain a molecular diagnosis for four patients with three distinct mitochondrial disorders. One patient was found to have Leigh syndrome due to a mutation in MT-ATP6, two affected siblings were discovered to be compound heterozygous for mutations in the NDUFV1 gene, which causes mitochondrial complex I deficiency, and one patient was found to have coenzyme Q10 deficiency due to compound heterozygous mutations in COQ2. In all cases conventional diagnostic testing failed to identify a molecular diagnosis. We suggest that additional studies should be conducted to evaluate exome sequencing as a primary diagnostic test for mitochondrial diseases, including those due to mtDNA mutations.

Keywords: CoQ10 deficiency; Exome; Homoplasmy; Inborn error of metabolism; Lactic academia; Leigh syndrome; MT-ATP6; Mitochondrial complex I; Mitochondrial genome; Molecular diagnostics; Next-generation sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ataxia / diagnosis
  • Ataxia / genetics
  • Child, Preschool
  • Electron Transport Complex I / deficiency
  • Electron Transport Complex I / genetics
  • Exome*
  • Female
  • Genetic Variation
  • Genome, Mitochondrial*
  • Heterozygote
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Infant
  • Infant, Newborn
  • Leigh Disease / diagnosis
  • Leigh Disease / genetics
  • Mitochondria / genetics
  • Mitochondrial Diseases / diagnosis*
  • Mitochondrial Diseases / genetics
  • Molecular Diagnostic Techniques
  • Muscle Weakness / diagnosis
  • Muscle Weakness / genetics
  • Pedigree
  • Sequence Analysis, DNA
  • Sequence Analysis, RNA*
  • Ubiquinone / deficiency
  • Ubiquinone / genetics

Substances

  • Ubiquinone
  • Electron Transport Complex I

Supplementary concepts

  • Coenzyme Q10 Deficiency
  • Mitochondrial complex I deficiency