Self-duplexing CUG repeats selectively inhibit mutant huntingtin expression

Nucleic Acids Res. 2013 Dec;41(22):10426-37. doi: 10.1093/nar/gkt825. Epub 2013 Sep 13.

Abstract

Huntington's disease (HD) is a neurodegenerative genetic disorder caused by the expansion of the CAG repeat in the translated sequence of the HTT gene. This expansion generates a mutant huntingtin protein that contains an abnormally elongated polyglutamine tract, which, together with mutant transcript, causes cellular dysfunction. Currently, there is no curative treatment available to patients suffering from HD; however, the selective inhibition of the mutant allele expression is a promising therapeutic option. In this study, we developed a new class of CAG repeat-targeting silencing reagents that consist of self-duplexing CUG repeats. Self-duplex formation was induced through one or several U-base substitutions. A number of self-duplexing guide-strand-only short interfering RNAs have been tested through transfection into cells derived from HD patients, showing distinct activity profiles. The best reagents were highly discriminatory between the normal and mutant HTT alleles (allele selectivity) and the HTT transcript and other transcripts containing shorter CAG repeats (gene selectivity). We also demonstrated that the self-duplexing CUG repeat short interfering RNAs use the RNA interference pathway to elicit silencing, and repeat-targeting reagents showed similar activity and selectivity when expressed from short hairpin RNA vectors to achieve more durable silencing effects.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Cells, Cultured
  • Genetic Vectors
  • Humans
  • Huntingtin Protein
  • Huntington Disease / genetics*
  • Mutation*
  • Nerve Tissue Proteins / genetics*
  • Nerve Tissue Proteins / metabolism
  • RNA Interference*
  • RNA, Small Interfering / chemistry*
  • Repetitive Sequences, Nucleic Acid*

Substances

  • HTT protein, human
  • Huntingtin Protein
  • Nerve Tissue Proteins
  • RNA, Small Interfering