Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain

EMBO Mol Med. 2013 Nov;5(11):1740-58. doi: 10.1002/emmm.201302797. Epub 2013 Oct 18.

Abstract

Cancer pain remains a major challenge and there is an urgent demand for the development of specific mechanism-based therapies. Various diseases are associated with unique signatures of expression of microRNAs (miRNAs), which reveal deep insights into disease pathology. Using a comprehensive approach combining genome-wide miRNA screening, molecular and in silico analyses with behavioural approaches in a clinically relevant model of metastatic bone-cancer pain in mice, we now show that tumour-induced conditions are associated with a marked dysregulation of 57 miRNAs in sensory neurons corresponding to tumour-affected areas. By establishing protocols for interference with disease-induced miRNA dysregulation in peripheral sensory neurons in vivo, we functionally validate six dysregulated miRNAs as significant modulators of tumour-associated hypersensitivity. In silico analyses revealed that their predicted targets include key pain-related genes and we identified Clcn3, a gene encoding a chloride channel, as a key miRNA target in sensory neurons, which is functionally important in tumour-induced nociceptive hypersensitivity in vivo. Our results provide new insights into endogenous gene regulatory mechanisms in cancer pain and open up attractive and viable therapeutic options.

Keywords: Clcn3; bone metastatic pain; gene regulation; miRNA inhibitors; miRNA mimics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Genome*
  • Humans
  • Mice
  • Mice, Inbred C3H
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Neoplasms / genetics*
  • Neoplasms / metabolism
  • Pain / genetics*
  • Pain / metabolism
  • Sensory Receptor Cells / metabolism

Substances

  • MicroRNAs