Whole-exome sequencing identifies a variant of the mitochondrial MT-ND1 gene associated with epileptic encephalopathy: west syndrome evolving to Lennox-Gastaut syndrome

Hum Mutat. 2013 Dec;34(12):1623-7. doi: 10.1002/humu.22445. Epub 2013 Oct 10.

Abstract

We describe a West syndrome (WS) patient with unidentified etiology that evolved to Lennox-Gastaut syndrome. The mitochondrial respiratory chain of the patient showed a simple complex I deficiency in fibroblasts. Whole-exome sequencing (WES) uncovered two heterozygous mutations in NDUFV2 gene that were reassigned to a pseudogene. With the WES data, it was possible to obtain whole mitochondrial DNA sequencing and to identify a heteroplasmic variant in the MT-ND1 (MTND1) gene (m.3946G>A, p.E214K). The expression of the gene in patient fibroblasts was not affected but the protein level was significantly reduced, suggesting that protein stability was affected by this mutation. The lower protein level also affected assembly of complex I and supercomplexes (I/III2 /IV and I/III2 ), leading to complex I deficiency. While ATP levels at steady state under stress conditions were not affected, the amount of ROS produced by complex I was significantly increased.

Keywords: Lennox-Gastaut syndrome; MT-ND1or MTND1; ROS; West syndrome.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • DNA Mutational Analysis
  • Exome*
  • Female
  • Genetic Association Studies
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Infant
  • Intellectual Disability / genetics*
  • Intellectual Disability / metabolism
  • Lennox Gastaut Syndrome
  • Molecular Sequence Data
  • Mutation*
  • NADH Dehydrogenase / chemistry
  • NADH Dehydrogenase / genetics*
  • NADH Dehydrogenase / metabolism
  • Sequence Alignment
  • Spasms, Infantile / genetics*
  • Spasms, Infantile / metabolism

Substances

  • NADH Dehydrogenase
  • MT-ND1 protein, human

Supplementary concepts

  • Epileptic encephalopathy, Lennox-Gastaut type