Small non-coding RNA signature in multiple sclerosis patients after treatment with interferon-β

BMC Med Genomics. 2014 May 17:7:26. doi: 10.1186/1755-8794-7-26.

Abstract

Background: Non-coding small RNA molecules play pivotal roles in cellular and developmental processes by regulating gene expression at the post-transcriptional level. In human diseases, the roles of the non-coding small RNAs in specific degradation or translational suppression of the targeted mRNAs suggest a potential therapeutic approach of post-transcriptional gene silencing that targets the underlying disease etiology. The involvement of non-coding small RNAs in the pathogenesis of neurodegenerative diseases such as Alzheimer's , Parkinson's disease and Multiple Sclerosis has been demonstrated. Multiple sclerosis (MS) is an autoimmune disease of the central nervous system, characterized by chronic inflammation, demyelination and scarring as well as a broad spectrum of signs and symptoms. The current standard treatment for SM is interferon ß (IFNß) that is less than ideal due to side effects. In this study we administered the standard IFN-ß treatment to Relapsing-Remitting MS patients, all responder to the therapy; then examined their sncRNA expression profiles in order to identify the ncRNAs that were associated with MS patients' response to IFNß.

Methods: 40 IFNß treated Relapsing-Remitting MS patients were enrolled. We analyzed the composition of the entire small transcriptome by a small RNA cloning method, using peripheral blood from Relapsing-Remitting MS patients at baseline and 3 and 6 months after the start of IFNß therapy. Real-time qPCR from the same patients group and from 20 additional patients was performed to profile miRNAs expression.

Results: Beside the altered expression of several miRNAs, our analyses revealed the differential expression of small nucleolar RNAs and misc-RNAs.For the first time, we found that the expression level of miR-26a-5p changed related to INF-β response. MiR-26a-5p expression was significantly higher in IFN-β treated RRMS patients at 3 months treatment, keeping quite stable at 6 months treatments.

Conclusions: Our results might provide insights into the mechanisms of action of IFN-β treatment in MS and provide fundamentals for the development of new biomarkers and/or therapeutic tools.

MeSH terms

  • Adolescent
  • Adult
  • Computational Biology
  • Disks Large Homolog 4 Protein
  • Female
  • Gene Expression Profiling*
  • Gene Expression Regulation, Neoplastic / drug effects
  • Gene Library
  • Gene Regulatory Networks / drug effects
  • Humans
  • Interferon-beta / pharmacology*
  • Interferon-beta / therapeutic use*
  • Intracellular Signaling Peptides and Proteins / genetics
  • Leukocytes / drug effects
  • Leukocytes / metabolism
  • Male
  • Membrane Proteins / genetics
  • MicroRNAs / blood
  • MicroRNAs / genetics
  • Multiple Sclerosis / blood
  • Multiple Sclerosis / drug therapy*
  • Multiple Sclerosis / genetics*
  • RNA, Small Untranslated / genetics*
  • RNA, Small Untranslated / metabolism
  • Sequence Analysis, RNA
  • Young Adult

Substances

  • DLG4 protein, human
  • Disks Large Homolog 4 Protein
  • Intracellular Signaling Peptides and Proteins
  • MIRN26A microRNA, human
  • Membrane Proteins
  • MicroRNAs
  • RNA, Small Untranslated
  • Interferon-beta