Exome sequencing identifies a novel mutation in PIK3R1 as the cause of SHORT syndrome

BMC Med Genet. 2014 May 2:15:51. doi: 10.1186/1471-2350-15-51.

Abstract

Background: SHORT syndrome is a rare autosomal dominant condition whose name is the acronym of short stature, hyperextensibility of joints, ocular depression, Rieger anomaly and teething delay (MIM 269880). Additionally, the patients usually present a low birth weight and height, lipodystrophy, delayed bone age, hernias, low body mass index and a progeroid appearance.

Case presentation: In this study, we used whole-exome sequencing approaches in two patients with clinical features of SHORT syndrome. We report the finding of a novel mutation in PIK3R1 (c.1929_1933delTGGCA; p.Asp643Aspfs*8), as well as a recurrent mutation c.1945C > T (p.Arg649Trp) in this gene.

Conclusions: We found a novel frameshift mutation in PIK3R1 (c.1929_1933delTGGCA; p.Asp643Aspfs*8) which consists of a deletion right before the site of substrate recognition. As a consequence, the protein lacks the position that interacts with the phosphotyrosine residue of the substrate, resulting in the development of SHORT syndrome.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Child, Preschool
  • Class Ia Phosphatidylinositol 3-Kinase
  • DNA Mutational Analysis
  • Exome
  • Facies
  • Growth Disorders / diagnosis*
  • Growth Disorders / genetics*
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Hypercalcemia / diagnosis*
  • Hypercalcemia / genetics*
  • Infant
  • Male
  • Metabolic Diseases / diagnosis*
  • Metabolic Diseases / genetics*
  • Models, Molecular
  • Mutation*
  • Nephrocalcinosis / diagnosis*
  • Nephrocalcinosis / genetics*
  • Phenotype
  • Phosphatidylinositol 3-Kinases / chemistry
  • Phosphatidylinositol 3-Kinases / genetics*
  • Protein Conformation

Substances

  • PIK3R1 protein, human
  • Class Ia Phosphatidylinositol 3-Kinase

Supplementary concepts

  • SHORT syndrome