Association of DNA methyltransferases 3A and 3B polymorphisms, and plasma folate levels with the risk of urothelial carcinoma

PLoS One. 2014 Aug 15;9(8):e104968. doi: 10.1371/journal.pone.0104968. eCollection 2014.

Abstract

Background: Interindividual genetic variations of human DNA methyltransferases (DNMTs), which involve the methyl donor from the folate-related one-carbon metabolism pathway, are hypothesized as a risk factor for urothelial carcinoma (UC). Therefore, we evaluated the role of gene-environment interaction in UC carcinogenesis.

Methods: A hospital-based case-control study was conducted by recruiting 192 patients with UC and 381 controls. Their plasma folate levels were measured using a competitive immunoassay kit. In addition, DNMT3A -448A>G and DNMT3B -579G>T genotyping was evaluated using a polymerase chain reaction-restriction fragment length polymorphism technique. Multivariate logistic regression and 95% confidence intervals (CIs) were applied to estimate the UC risk.

Results: We observed that patients with UC exhibited a higher prevalence rate of folate insufficiency (folate levels ≤6 ng/mL) compared with the controls (35.94% and 18.37%, respectively). Furthermore, folate levels were higher in the prevalent UC patients than in the incident UC patients. However, folate insufficiency was similarly associated with a nearly two-fold increase in the risk of UC regardless of the UC patient group. In addition, the frequencies of the variant alleles for DNMT3A and DNMT3B were 0.80 and 0.92, respectively, and no association was observed with UC risk. However, participants with a variant homozygous genotype of DNMT3B -579G>T and folate insufficiency or with high cumulative cigarette smoking exhibited an increased risk of UC.

Conclusion: Overall, environmental factors may contribute more significantly to UC carcinogenesis compared with genetic susceptibility. Future studies should investigate other polymorphisms of DNMT3A and DNMT3B to determine genetic susceptibility.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Case-Control Studies
  • DNA (Cytosine-5-)-Methyltransferases / genetics*
  • DNA Methyltransferase 3A
  • DNA Methyltransferase 3B
  • Female
  • Folic Acid / blood*
  • Gene-Environment Interaction
  • Genetic Predisposition to Disease
  • Humans
  • Male
  • Middle Aged
  • Polymorphism, Single Nucleotide*
  • Risk Factors
  • Smoking / adverse effects
  • Urologic Neoplasms / blood*
  • Urologic Neoplasms / epidemiology
  • Urologic Neoplasms / genetics*

Substances

  • DNMT3A protein, human
  • Folic Acid
  • DNA (Cytosine-5-)-Methyltransferases
  • DNA Methyltransferase 3A

Grants and funding

This study was supported by grants from the National Science Council of the ROC (NSC 100-2314-B-039-035 and NSC 101-2314-B-039-025-MY3), the China Medical University Hospital (DMR-CS-001-100 and DMR-100-163), and China Medical University (CMU101-N1-02). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.