The crystal structure of the RhoA-AKAP-Lbc DH-PH domain complex

Biochem J. 2014 Dec 1;464(2):231-9. doi: 10.1042/BJ20140606.

Abstract

The RhoGEF (Rho GTPase guanine-nucleotide-exchange factor) domain of AKAP-Lbc (A-kinase-anchoring protein-Lbc, also known as AKAP13) catalyses nucleotide exchange on RhoA and is involved in the development of cardiac hypertrophy. The RhoGEF activity of AKAP-Lbc has also been implicated in cancer. We have determined the X-ray crystal structure of the complex between RhoA-GDP and the AKAP-Lbc RhoGEF [DH (Dbl-homologous)-PH (pleckstrin homology)] domain to 2.1 Å (1 Å = 0.1 nm) resolution. The structure reveals important differences compared with related RhoGEF proteins such as leukaemia-associated RhoGEF. Nucleotide-exchange assays comparing the activity of the DH-PH domain to the DH domain alone showed no role for the PH domain in nucleotide exchange, which is explained by the RhoA-AKAP-Lbc structure. Comparison with a structure of the isolated AKAP-Lbc DH domain revealed a change in conformation of the N-terminal 'GEF switch' region upon binding to RhoA. Isothermal titration calorimetry showed that AKAP-Lbc has only micromolar affinity for RhoA, which combined with the presence of potential binding pockets for small molecules on AKAP-Lbc, raises the possibility of targeting AKAP-Lbc with GEF inhibitors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • A Kinase Anchor Proteins / chemistry*
  • Binding Sites
  • Crystallography, X-Ray*
  • GTP Phosphohydrolases / chemistry
  • Humans
  • Minor Histocompatibility Antigens
  • Protein Conformation
  • Protein Structure, Tertiary*
  • Proto-Oncogene Proteins / chemistry*
  • Rho Guanine Nucleotide Exchange Factors / chemistry
  • rhoA GTP-Binding Protein / chemistry*

Substances

  • A Kinase Anchor Proteins
  • AKAP13 protein, human
  • Minor Histocompatibility Antigens
  • Proto-Oncogene Proteins
  • Rho Guanine Nucleotide Exchange Factors
  • GTP Phosphohydrolases
  • rhoA GTP-Binding Protein