Whole-Genome Sequencing Identifies STAT4 as a Putative Susceptibility Gene in Classic Kaposi Sarcoma

J Infect Dis. 2015 Jun 1;211(11):1842-51. doi: 10.1093/infdis/jiu667. Epub 2014 Dec 9.

Abstract

Background: Classic Kaposi sarcoma (cKS) is an inflammatory tumor caused by human herpesvirus 8 (HHV-8) commonly observed in elderly men of Mediterranean origin. We studied a Finnish family of 5 affected individuals in 2 generations. Except for atypical mycobacterial infection of the index case, the affected individuals did not have notable histories of infection.

Methods: We performed genome and exome sequencing and mapped shared chromosomal regions to identify genetic predisposition in the family.

Results: We identified 12 protein-coding candidate variants that segregated in the 3 affected cousins from whom we had samples. The affected mother of the index case was an obligatory carrier. Among the 12 candidates was a rare heterozygous substitution rs141331848 (c.1337C>T, p.Thr446Ile) in the DNA-binding domain of STAT4. The variant was not present in 242 Finnish control genomes or 180 additional regional controls. Activated T-helper cells from the HHV-8-negative variant carriers showed reduced interferon γ production, compared with age and sex matched wild-type individuals. We screened STAT4 in additional 18 familial KS cases and the variant site from 56 sporadic KS cases but detected no pathogenic mutations.

Conclusions: Our data suggest that STAT4 is a potential cKS-predisposition gene, but further functional and genetic validation is needed.

Keywords: HHV8; STAT4; classic Kaposi sarcoma; genetic predisposition; genome sequencing.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Amino Acid Sequence
  • Female
  • Genetic Linkage
  • Genetic Predisposition to Disease / genetics*
  • Genome
  • Humans
  • Interferon-gamma / immunology
  • Leukocytes, Mononuclear
  • Male
  • Middle Aged
  • Molecular Sequence Data
  • Pedigree
  • STAT4 Transcription Factor / genetics*
  • Sarcoma, Kaposi / genetics*
  • Sarcoma, Kaposi / immunology
  • Sarcoma, Kaposi / metabolism
  • Sequence Alignment
  • Sequence Analysis, DNA
  • T-Lymphocytes

Substances

  • STAT4 Transcription Factor
  • STAT4 protein, human
  • Interferon-gamma