Splicing abnormality of integrin β4 gene (ITGB4) due to nucleotide substitutions far from splice site underlies pyloric atresia-junctional epidermolysis bullosa syndrome

J Dermatol Sci. 2015 Apr;78(1):61-6. doi: 10.1016/j.jdermsci.2015.01.016. Epub 2015 Feb 7.

Abstract

Background: Pyloric atresia-junctional epidermolysis bullosa syndrome (PA-JEB) is a rare subgroup of epidermolysis bullosa, which is inherited disorder characterized by skin fragile. PA-JEB is caused by mutation of ITGB4 or ITGA6, which encodes integrin β4 or α6, respectively.

Objective: To clarify the molecular basis of PA-JEB and to expand the mutational database, we carried out the mutational analysis of a 29-year-old Japanese PA-JEB patient.

Methods: Standard methods were used to prepare, PCR-amplify, and sequence DNA or mRNA in peripheral blood or skin samples, respectively.

Results: Sequence analysis revealed two novel mutations in ITGB4, c.264+2TtoA and c.1762-25TtoA. The paternal c.264+2TtoA resided within a splice site consensus region and generated two splice variants resulting in a premature termination codon (PTC). The maternal c.1762-25TtoA was a unique mutation because of its location, 25 bp away from the splice site, and resided in branch-point consensus sequence. This c.1762-25TtoA substitution resulted in generation of two abnormal transcripts each with a PTC. Genotype-phenotype correlation in this case was also unique because the proband showed a non-lethal phenotype regardless of both mutations resulted in only abnormal transcripts with a PTC.

Conclusion: The present case expands the mutational database and further elucidates the genotype-phenotype correlation for this rare disease, PA-JEB.

Keywords: Blister; Branch-point mutation; Genodermatosis; RT-PCR; Splice site mutation.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Biopsy
  • DNA Mutational Analysis / methods
  • Ectodermal Dysplasia / diagnosis
  • Ectodermal Dysplasia / genetics*
  • Fluorescent Antibody Technique
  • Genetic Association Studies
  • Genetic Markers
  • Genetic Predisposition to Disease
  • Humans
  • Integrin beta4 / analysis
  • Integrin beta4 / genetics*
  • Male
  • Microscopy, Electron
  • Mutation*
  • Phenotype
  • RNA Splicing*
  • Reverse Transcriptase Polymerase Chain Reaction
  • Skin / chemistry
  • Skin / ultrastructure

Substances

  • Genetic Markers
  • ITGB4 protein, human
  • Integrin beta4

Supplementary concepts

  • Epidermolysis bullosa with pyloric atresia