Challenging AQP4 druggability for NMO-IgG antibody binding using molecular dynamics and molecular interaction fields

Biochim Biophys Acta. 2015 Jul;1848(7):1462-71. doi: 10.1016/j.bbamem.2015.03.019. Epub 2015 Mar 31.

Abstract

Neuromyelitis optica (NMO) is a multiple sclerosis-like immunopathology disease affecting optic nerves and the spinal cord. Its pathological hallmark is the deposition of a typical immunoglobulin, called NMO-IgG, against the water channel Aquaporin-4 (AQP4). Preventing NMO-IgG binding would represent a valuable molecular strategy for a focused NMO therapy. The recent observation that aspartate in position 69 (D69) is determinant for the formation of NMO-IgG epitopes prompted us to carry out intensive Molecular Dynamics (MD) studies on a number of single-point AQP4 mutants. Here, we report a domino effect originating from the point mutation at position 69: we find that the side chain of T62 is reoriented far from its expected position leaning on the lumen of the pore. More importantly, the strength of the H-bond interaction between L53 and T56, at the basis of the loop A, is substantially weakened. These events represent important pieces of a clear-cut mechanistic rationale behind the failure of the NMO-IgG binding, while the water channel function as well as the propensity to aggregate into OAPs remains unaltered. The molecular interaction fields (MIF)-based analysis of cavities complemented MD findings indicating a putative binding site comprising the same residues determining epitope reorganization. In this respect, docking studies unveiled an intriguing perspective to address the future design of small drug-like compounds against NMO. In agreement with recent experimental observations, the present study is the first computational attempt to elucidate NMO-IgG binding at the molecular level, as well as a first effort toward a less elusive AQP4 druggability.

Keywords: Aquaporins; Druggability; Molecular docking; Molecular dynamics; Molecular interaction fields.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aquaporin 4 / chemistry*
  • Aquaporin 4 / genetics
  • Aquaporin 4 / metabolism
  • Aspartic Acid / chemistry*
  • Aspartic Acid / genetics
  • Aspartic Acid / metabolism
  • Binding Sites / genetics
  • Crystallography, X-Ray
  • Epitopes / chemistry
  • Epitopes / metabolism
  • Humans
  • Hydrogen Bonding
  • Immunoglobulin G / chemistry*
  • Immunoglobulin G / metabolism
  • Kinetics
  • Leucine / chemistry
  • Leucine / metabolism
  • Molecular Dynamics Simulation*
  • Neuromyelitis Optica / immunology
  • Neuromyelitis Optica / metabolism
  • Point Mutation
  • Protein Binding
  • Threonine / chemistry
  • Threonine / metabolism

Substances

  • AQP4 protein, human
  • Aquaporin 4
  • Epitopes
  • Immunoglobulin G
  • Threonine
  • Aspartic Acid
  • Leucine