Gene Expression-Based Predictive Models of Graft Versus Host Disease-Associated Dry Eye

Invest Ophthalmol Vis Sci. 2015 Jul;56(8):4570-81. doi: 10.1167/iovs.15-16736.

Abstract

Purpose: To develop a predictive model based on inflammatory gene mRNA expression in conjunctival cells of graft versus host disease (GvHD)-associated dry eye (DE) patients, as well as to find meaningful correlations between gene signals and clinical signs.

Methods: Twenty GvHD-DE patients and 14 healthy controls were recruited. Patients discontinued medications for 1 week before examination. Dry eye-related symptoms and signs were recorded, and conjunctival epithelial cells were collected by impression cytology after spending 20 minutes under standard conditions within a Controlled Environmental Research Laboratory. Gene expression of inflammatory molecules was determined by polymerase chain reaction, and the results were correlated with clinical signs. Shrinkage discriminant analysis, support vector machine, and k-nearest neighbor classifier methods were used to develop predictive models that were validated considering accuracy, calibration, and discriminant capability.

Results: Out of the 84 genes analyzed, 34 showed significant differences in expression. IL-6, IL-9, CCL24, CCL18, IL-10, IFN-γ, and CCL2 were highly increased (>6-fold); 26 genes were moderately upregulated (2- to 6-fold), whereas EGFR was downregulated (2.63 fold) in GvHD-DE samples. A panel based on EGFR, IL-6, IL-9, and NAMPT had an area under the receiver operating characteristic curve of 0.994, a sensitivity of 100%, and a specificity of 92.9%. EGFR expression correlated negatively with ocular surface damage markers, while IL-6, IL-9, and NAMPT correlated positively with these tests.

Conclusions: EGFR, IL-6, IL-9, and NAMPT have the greatest potential as diagnostic biomarkers, with excellent sensitivity, specificity, and clinical relevance to the ocular surface status of GvHD.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Biomarkers / metabolism*
  • Conjunctiva / metabolism
  • Cytokines / genetics*
  • Dry Eye Syndromes / diagnosis
  • Dry Eye Syndromes / genetics*
  • Epithelial Cells / metabolism
  • ErbB Receptors / genetics
  • Eye Proteins / genetics*
  • Female
  • Gene Expression Regulation / physiology*
  • Graft vs Host Disease / diagnosis
  • Graft vs Host Disease / genetics*
  • Humans
  • Interleukin-6 / genetics
  • Interleukin-9 / genetics
  • Male
  • Middle Aged
  • Models, Biological*
  • Nicotinamide Phosphoribosyltransferase / genetics
  • RNA, Messenger / genetics
  • ROC Curve
  • Real-Time Polymerase Chain Reaction
  • Sensitivity and Specificity
  • Surveys and Questionnaires

Substances

  • Biomarkers
  • Cytokines
  • Eye Proteins
  • IL6 protein, human
  • IL9 protein, human
  • Interleukin-6
  • Interleukin-9
  • RNA, Messenger
  • Nicotinamide Phosphoribosyltransferase
  • nicotinamide phosphoribosyltransferase, human
  • EGFR protein, human
  • ErbB Receptors