Low BIK outside-inside-out interactive inflammation immune-induced transcription-dependent apoptosis through FUT3-PMM2-SQSTM1-SFN-ZNF384

Immunol Res. 2016 Apr;64(2):461-9. doi: 10.1007/s12026-015-8701-x.

Abstract

Eighteen different Pearson mutual-positive-correlation BIK-activatory molecular feedback upstream and downstream networks were constructed from 79 overlapping of 376 GRNInfer and 98 Pearson under BIK CC ≥ 0.25 in low normal adjacent tissues of Taiwan compared with high lung adenocarcinoma. Our identified BIK interactive total feedback molecular network showed FUT3 [fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase Lewis blood group)], PMM2 (phosphomannomutase 2), SQSTM1 (sequestosome 1), SFN_2 [REX2 RNA exonuclease 2 homolog (S. cerevisiae)] and ZNF384 (zinc finger protein 384) in low normal adjacent tissues of lung adenocarcinoma. BIK interactive total feedback terms included mitochondrial envelope, endomembrane system, integral to membrane, Golgi apparatus, cytoplasm, nucleus, cytosol, intracellular signaling cascade, mitochondrion, extracellular space, inflammation, immune response, apoptosis, cell differentiation, cell cycle, regulation of cell cycle, cell proliferation, estrogen-responsive protein Efp controls cell cycle and breast tumors growth, induction or regulation of apoptosis based on integrative GO, KEGG, GenMAPP, BioCarta and disease databases in low normal adjacent tissues of lung adenocarcinoma. Therefore, we propose low BIK outside-inside-out interactive inflammation immune-induced transcription-dependent apoptosis through FUT3-PMM2-SQSTM1-SFN-ZNF384 in normal adjacent tissues of lung adenocarcinoma.

Keywords: Apoptosis; BIK interactive network; Inflammation immune; Outside-inside-out; Transcription-dependent.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 14-3-3 Proteins / genetics
  • Adenocarcinoma / genetics
  • Adenocarcinoma / immunology
  • Adenocarcinoma / metabolism
  • Adenocarcinoma of Lung
  • Apoptosis / genetics*
  • Apoptosis Regulatory Proteins / genetics*
  • Apoptosis Regulatory Proteins / metabolism
  • Biomarkers, Tumor / genetics
  • Computational Biology / methods
  • Exoribonucleases / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Gene Regulatory Networks
  • Humans
  • Inflammation / genetics*
  • Inflammation / immunology*
  • Inflammation / metabolism
  • Lung Neoplasms / genetics
  • Lung Neoplasms / immunology
  • Lung Neoplasms / metabolism
  • Membrane Proteins / genetics*
  • Membrane Proteins / metabolism
  • Mitochondrial Proteins
  • Phosphotransferases (Phosphomutases) / genetics
  • Sequestosome-1 Protein / genetics
  • Trans-Activators / genetics
  • Transcription, Genetic*

Substances

  • 14-3-3 Proteins
  • Apoptosis Regulatory Proteins
  • BIK protein, human
  • Biomarkers, Tumor
  • Membrane Proteins
  • Mitochondrial Proteins
  • SQSTM1 protein, human
  • Sequestosome-1 Protein
  • Trans-Activators
  • ZNF384 protein, human
  • Exoribonucleases
  • SFN protein, human
  • Phosphotransferases (Phosphomutases)
  • phosphomannomutase 2, human