Crystal structure of the homocysteine methyltransferase MmuM from Escherichia coli

Biochem J. 2016 Feb 1;473(3):277-84. doi: 10.1042/BJ20150980. Epub 2015 Nov 12.

Abstract

Homocysteine S-methyltransferases (HMTs, EC 2.1.1.0) catalyse the conversion of homocysteine to methionine using S-methylmethionine or S-adenosylmethionine as the methyl donor. HMTs play an important role in methionine biosynthesis and are widely distributed among micro-organisms, plants and animals. Additionally, HMTs play a role in metabolite repair of S-adenosylmethionine by removing an inactive diastereomer from the pool. The mmuM gene product from Escherichia coli is an archetypal HMT family protein and contains a predicted zinc-binding motif in the enzyme active site. In the present study, we demonstrate X-ray structures for MmuM in oxidized, apo and metallated forms, representing the first such structures for any member of the HMT family. The structures reveal a metal/substrate-binding pocket distinct from those in related enzymes. The presented structure analysis and modelling of co-substrate interactions provide valuable insight into the function of MmuM in both methionine biosynthesis and cofactor repair.

Keywords: S-methylmethionine; adenosylmethionine; homocysteine S-methyl-transferase; metabolite damage; metabolite repair; methionine biosynthesis.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Crystallography, X-Ray
  • Escherichia coli / chemistry
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Homocysteine / metabolism
  • Homocysteine S-Methyltransferase / chemistry*
  • Homocysteine S-Methyltransferase / genetics
  • Homocysteine S-Methyltransferase / metabolism
  • Methionine / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Sequence Alignment

Substances

  • Escherichia coli Proteins
  • Homocysteine
  • Methionine
  • Homocysteine S-Methyltransferase
  • mmuM protein, E coli