Elongation of the Poly-γ-glutamate Tail of F420 Requires Both Domains of the F420:γ-Glutamyl Ligase (FbiB) of Mycobacterium tuberculosis

J Biol Chem. 2016 Mar 25;291(13):6882-94. doi: 10.1074/jbc.M115.689026. Epub 2016 Feb 9.

Abstract

Cofactor F420is an electron carrier with a major role in the oxidoreductive reactions ofMycobacterium tuberculosis, the causative agent of tuberculosis. A γ-glutamyl ligase catalyzes the final steps of the F420biosynthesis pathway by successive additions ofl-glutamate residues to F420-0, producing a poly-γ-glutamate tail. The enzyme responsible for this reaction in archaea (CofE) comprises a single domain and produces F420-2 as the major species. The homologousM. tuberculosisenzyme, FbiB, is a two-domain protein and produces F420with predominantly 5-7l-glutamate residues in the poly-γ-glutamate tail. The N-terminal domain of FbiB is homologous to CofE with an annotated γ-glutamyl ligase activity, whereas the C-terminal domain has sequence similarity to an FMN-dependent family of nitroreductase enzymes. Here we demonstrate that full-length FbiB adds multiplel-glutamate residues to F420-0in vitroto produce F420-5 after 24 h; communication between the two domains is critical for full γ-glutamyl ligase activity. We also present crystal structures of the C-terminal domain of FbiB in apo-, F420-0-, and FMN-bound states, displaying distinct sites for F420-0 and FMN ligands that partially overlap. Finally, we discuss the features of a full-length structural model produced by small angle x-ray scattering and its implications for the role of N- and C-terminal domains in catalysis.

Keywords: FbiB; Mycobacterium tuberculosis; cofactor F420; crystal structure; gamma-glutamyl ligase; high-performance liquid chromatography (HPLC); mass spectrometry (MS); poly-gamma-glutamate tail; x-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biocatalysis
  • Catalytic Domain
  • Cloning, Molecular
  • Coenzymes / chemistry*
  • Coenzymes / metabolism
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Ligases / chemistry*
  • Ligases / genetics
  • Ligases / metabolism
  • Models, Molecular
  • Molecular Sequence Data
  • Mycobacterium tuberculosis / chemistry*
  • Mycobacterium tuberculosis / enzymology
  • Mycobacterium tuberculosis / genetics
  • Polyglutamic Acid / analogs & derivatives*
  • Polyglutamic Acid / chemistry
  • Polyglutamic Acid / metabolism
  • Protein Multimerization
  • Protein Structure, Secondary
  • Sequence Alignment

Substances

  • Bacterial Proteins
  • Coenzymes
  • poly(gamma-glutamic acid)
  • Polyglutamic Acid
  • Ligases

Associated data

  • PDB/2PHN
  • PDB/3GFA
  • PDB/3K6H
  • PDB/4XOM
  • PDB/4XOO
  • PDB/4XOQ