Genotype-phenotype correlation of SMN locus genes in spinal muscular atrophy children from Argentina

Eur J Paediatr Neurol. 2016 Nov;20(6):910-917. doi: 10.1016/j.ejpn.2016.07.017. Epub 2016 Jul 28.

Abstract

Background/purpose: Spinal muscular atrophy (SMA) is an autosomal recessive neuromuscular disorder, considered one of the leading causes of infant mortality. It is caused by mutations in the SMN1 gene. A highly homologous copy of this gene named SMN2 and other neighbouring genes, SERF1A and NAIP, are considered phenotypic modifiers of the disease. In recent years, notable advances have been made in SMA research regarding evaluation, prognosis, and therapeutic options. Thus, genotype-phenotype studies in SMA are important to stratify patients for motor function tests and for envisaged clinical trials. The aim of this study was to provide clinical and molecular data of a series of Argentinean children with SMA to establish a comprehensive genotype-phenotype correlation.

Methods: 144 Argentinean children with SMA (56 children with type I, 58 with type II, and 30 with type III) were evaluated. The copy number of SMN2, SERF1A, and NAIP genes was established using MLPA (Multiplex Ligation-dependent Probe Amplification) and then correlated with the patients clinical subtypes. To improve clinical characterization we considered the initial symptoms that prompted the consultation, age of acquisition of motor abilities to independent walking and age at loss of gait. We also evaluated clinical and molecular features of sibling pairs in seven families.

Results: A strong correlation was observed between the SMN2 copy number and SMA phenotype while SERF1A and NAIP copy number showed a moderate correlation. We observed intra- and inter-family differences among the SMA types.

Conclusion: This first genotype-phenotype correlation study in Argentinean SMA children provides data to improve patient stratification and define more adequate follow-up parameters.

Keywords: Multiplex Ligation-dependent Probe Amplification (MLPA); Neuronal apoptosis inhibitory protein gene (NAIP); Small EDRK-rich factor 1A (SERF1A); Spinal muscular atrophy (SMA); Survival motor neuron 1 gene (SMN1); Survival motor neuron 2 gene (SMN2).

MeSH terms

  • Adolescent
  • Age of Onset
  • Argentina
  • Child
  • Child, Preschool
  • Cohort Studies
  • Disease Progression
  • Female
  • Gene Dosage
  • Genotype
  • Humans
  • Male
  • Nerve Tissue Proteins / genetics
  • Neuronal Apoptosis-Inhibitory Protein / genetics
  • Phenotype
  • Retrospective Studies
  • Spinal Muscular Atrophies of Childhood / epidemiology
  • Spinal Muscular Atrophies of Childhood / genetics*
  • Survival of Motor Neuron 1 Protein / genetics*
  • Survival of Motor Neuron 2 Protein / genetics
  • Young Adult

Substances

  • NAIP protein, human
  • Nerve Tissue Proteins
  • Neuronal Apoptosis-Inhibitory Protein
  • SERF1A protein, human
  • SMN1 protein, human
  • SMN2 protein, human
  • Survival of Motor Neuron 1 Protein
  • Survival of Motor Neuron 2 Protein