Three-dimensional structural analysis reveals a Cdk5-mediated kinase cascade regulating hepatic biliary network branching in zebrafish

Development. 2017 Jul 15;144(14):2595-2605. doi: 10.1242/dev.147397.

Abstract

The intrahepatic biliary network is a highly branched three-dimensional network lined by biliary epithelial cells, but how its branching patterns are precisely established is not clear. We designed a new computer-based algorithm that quantitatively computes the structural differences of the three-dimensional networks. Utilizing the algorithm, we showed that inhibition of Cyclin-dependent kinase 5 (Cdk5) led to reduced branching in the intrahepatic biliary network in zebrafish. Further, we identified a previously unappreciated downstream kinase cascade regulated by Cdk5. Pharmacological manipulations of this downstream kinase cascade produced a crowded branching defect in the intrahepatic biliary network and influenced actin dynamics in biliary epithelial cells. We generated larvae carrying a mutation in cdk5 regulatory subunit 1a (cdk5r1a), an essential activator of Cdk5. cdk5r1a mutant larvae show similar branching defects as those observed in Cdk5 inhibitor-treated larvae. A small-molecule compound that interferes with the downstream kinase cascade rescued the mutant phenotype. These results provide new insights into branching morphogenesis of the intrahepatic biliary network.

Keywords: Actin dynamics; Biliary atresia; Biliary epithelial cells; Cdk5r1a; Intrahepatic biliary network.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actin Depolymerizing Factors / metabolism
  • Algorithms
  • Animals
  • Animals, Genetically Modified
  • Bile Ducts, Intrahepatic / enzymology*
  • Bile Ducts, Intrahepatic / growth & development*
  • Computer Simulation
  • Cyclin-Dependent Kinase 5 / antagonists & inhibitors
  • Cyclin-Dependent Kinase 5 / genetics
  • Cyclin-Dependent Kinase 5 / metabolism*
  • Gene Knockout Techniques
  • Imaging, Three-Dimensional
  • Larva / growth & development
  • Larva / metabolism
  • Lim Kinases / metabolism
  • Models, Anatomic
  • Morphogenesis / drug effects
  • Morphogenesis / genetics
  • Morphogenesis / physiology
  • Mutation
  • Protein Kinase Inhibitors / pharmacology
  • Signal Transduction
  • Zebrafish / genetics
  • Zebrafish / growth & development*
  • Zebrafish / metabolism*
  • Zebrafish Proteins / antagonists & inhibitors
  • Zebrafish Proteins / genetics
  • Zebrafish Proteins / metabolism*
  • p21-Activated Kinases / metabolism

Substances

  • Actin Depolymerizing Factors
  • Protein Kinase Inhibitors
  • Zebrafish Proteins
  • Cyclin-Dependent Kinase 5
  • Lim Kinases
  • p21-Activated Kinases