Structural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase

Structure. 2017 Sep 5;25(9):1337-1347.e6. doi: 10.1016/j.str.2017.06.018. Epub 2017 Jul 27.

Abstract

DHHC enzymes catalyze palmitoylation, a major post-translational modification that regulates a number of key cellular processes. There are up to 24 DHHCs in mammals and hundreds of substrate proteins that get palmitoylated. However, how DHHC enzymes engage with their substrates is still poorly understood. There is currently no structural information about the interaction between any DHHC enzyme and protein substrates. In this study we have investigated the structural and thermodynamic bases of interaction between the ankyrin repeat domain of human DHHC17 (ANK17) and Snap25b. We solved a high-resolution crystal structure of the complex between ANK17 and a peptide fragment of Snap25b. Through structure-guided mutagenesis, we discovered key residues in DHHC17 that are critically important for interaction with Snap25b. We further extended our finding by showing that the same residues are also crucial for the interaction of DHHC17 with Huntingtin, one of its most physiologically relevant substrates.

Keywords: DHHC; DHHC17; Huntingtin; Snap25b; X-ray crystallography; palmitoylation; palmitoyltransferase; posttranslational modification; protein lipidation; protein-protein interaction.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, N.I.H., Intramural
  • Research Support, N.I.H., Extramural

MeSH terms

  • Acyltransferases / chemistry*
  • Acyltransferases / genetics
  • Acyltransferases / metabolism*
  • Adaptor Proteins, Signal Transducing / chemistry*
  • Adaptor Proteins, Signal Transducing / genetics
  • Adaptor Proteins, Signal Transducing / metabolism*
  • Amino Acid Motifs
  • Ankyrin Repeat
  • Binding Sites
  • Crystallography, X-Ray
  • HEK293 Cells
  • Humans
  • Huntingtin Protein / metabolism*
  • Models, Molecular
  • Mutation
  • Nerve Tissue Proteins / chemistry*
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism*
  • Palmitates / metabolism
  • Protein Domains
  • Substrate Specificity
  • Synaptosomal-Associated Protein 25 / metabolism*

Substances

  • Adaptor Proteins, Signal Transducing
  • HTT protein, human
  • Huntingtin Protein
  • Nerve Tissue Proteins
  • Palmitates
  • Snap25 protein, mouse
  • Synaptosomal-Associated Protein 25
  • Acyltransferases
  • ZDHHC17 protein, human