The Structure of the ZMYND8/Drebrin Complex Suggests a Cytoplasmic Sequestering Mechanism of ZMYND8 by Drebrin

Structure. 2017 Nov 7;25(11):1657-1666.e3. doi: 10.1016/j.str.2017.08.014. Epub 2017 Sep 28.

Abstract

Malfunctions of the actin binding protein Drebrin have been implicated in various human diseases such as Alzheimer's disease, cognitive impairments, cancer, and digestive disorders, though with poorly understood mechanisms. The ADF-H domain of Drebrin does not contain actin binding and depolymerizing activity. Instead, it binds to a histone marker reader, ZMYND8. Here we present the high-resolution crystal structure of Drebrin ADF-H in complex with the ZMYND8 PHD-BROMO-PWWP tandem, elucidating the mechanistic basis governing the highly specific interaction of the two proteins. The structure reveals that the ZMYND8 PHD-BROMO-PWWP tandem forms a structural supramodule that is necessary for binding to Drebrin ADF-H. Drebrin ADF-H competes with modified histone for binding to ZMYND8. Binding of Drebrin can shuttle ZMYND8 from nucleus to cytoplasm in living cells. Taken together, our study uncovers a non-actin target binding mode for ADF-H domains, and suggests that Drebrin may regulate activities of epigenetic reader ZMYND8 via its cytoplasmic sequestration.

Keywords: ADF-H domain; Drebrin; ZMYND11; ZMYND8; actin bundling protein; histone marker reader.

MeSH terms

  • Active Transport, Cell Nucleus
  • Amino Acid Sequence
  • Binding Sites
  • Binding, Competitive
  • Cell Nucleus / genetics
  • Cell Nucleus / metabolism
  • Cloning, Molecular
  • Crystallography, X-Ray
  • Cytoplasm / genetics
  • Cytoplasm / metabolism
  • Epigenesis, Genetic*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • HEK293 Cells
  • Histones / chemistry*
  • Histones / genetics
  • Histones / metabolism
  • Humans
  • Models, Molecular
  • Neuropeptides / chemistry*
  • Neuropeptides / genetics
  • Neuropeptides / metabolism
  • Protein Binding
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Tumor Suppressor Proteins / chemistry*
  • Tumor Suppressor Proteins / genetics
  • Tumor Suppressor Proteins / metabolism

Substances

  • Histones
  • Neuropeptides
  • Recombinant Proteins
  • Tumor Suppressor Proteins
  • ZMYND8 protein, human
  • drebrins