MeCP2 AT-Hook1 mutations in patients with intellectual disability and/or schizophrenia disrupt DNA binding and chromatin compaction in vitro

Hum Mutat. 2018 May;39(5):717-728. doi: 10.1002/humu.23409. Epub 2018 Mar 8.

Abstract

Mutations in the methyl-CpG-binding protein-2 gene (MECP2) are commonly associated with Rett syndrome. However, it has long been appreciated that there exists a spectrum of neuropsychiatric phenotypes associated with MECP2 variants. The most frequent Rett missense mutations are located in either the methyl-CpG-binding domain (MBD) or transcription repression domain (TRD). Clinical roles for mutations in other domains such as the intervening domain (ID) or AT-Hook domains have yet to be determined. Here, we report functional analysis of MECP2 missense mutations, located in AT-Hook1 within the ID, in a large Pakistani family with childhood onset cognitive decline and schizophrenia (SCZ), de novo in a girl with atypical Rett syndrome, and de novo in a woman with SCZ. We show that both p.Arg190His and p.Arg190Cys affect the ability of MeCP2 to bind to AT-rich DNA, also the brain-derived neurotrophic factor (BDNF) promoter, with the more drastic effects seen for p.Arg190Cys. Both mutations also affect nuclear chromatin clustering in vitro. These data support a possible molecular link between MECP2 AT-Hook1 mutations and psychosis. Given the ongoing large-scale whole exome and whole genome sequencing projects for psychiatric disorders, our findings suggest that rare missense variants in MECP2 be carefully evaluated for molecular consequences.

Keywords: AT-Hook domain; EMSA; MeCP2; chromatin; intellectual disability; schizophrenia.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • AT-Hook Motifs*
  • Adult
  • Animals
  • Base Sequence
  • Cell Line
  • Chromatin / metabolism*
  • Computer Simulation
  • DNA / genetics
  • DNA / metabolism*
  • DNA Mutational Analysis
  • Female
  • Humans
  • Intellectual Disability / genetics*
  • Male
  • Methyl-CpG-Binding Protein 2 / chemistry*
  • Methyl-CpG-Binding Protein 2 / genetics*
  • Mice
  • Middle Aged
  • Mutation / genetics*
  • Pedigree
  • Protein Domains
  • Rett Syndrome / genetics
  • Schizophrenia / genetics*

Substances

  • Chromatin
  • Methyl-CpG-Binding Protein 2
  • DNA

Supplementary concepts

  • Rett Syndrome, Atypical