Screening for mutation hotspots in Bardet-Biedl syndrome patients from India

Indian J Med Res. 2018 Feb;147(2):177-182. doi: 10.4103/ijmr.IJMR_1822_15.

Abstract

Background & objectives: Bardet-Biedl syndrome (BBS) is a genetically heterogeneous autosomal recessive disorder characterized by multiple organ defects involving retina, kidney, liver and brain. Disease-causing mutations in BBS genes narrowed down by homozygosity mapping in small consanguineous and non-consanguineous pedigrees were reported in 80 per cent of the study population. This study was aimed to screen these genes (BBS3, BBS10) and specific exons of BBS genes (BBS1, BBS5, MKKS, BBS9, BBS11 and BBS12) for recurrent mutations in a selected sample of BBS patients.

Methods: The recurrent mutations in BBS genes were screened in the BBS affected individuals by PCR based direct sequencing. The pathogenicity of the observed mutations were confirmed by co-segregation analysis, screening of healthy unrelated controls and in silico analysis.

Results: In the 64 BBS patients (44 males, 20 females) were studied, mutations were predominant in BBS10 and ARL6 genes; the c.272T>C; p.(I91T) mutation in ARL6 gene was a recurrent mutation. One novel non-sense mutation c.425T>G; p(L142FNx01) was obtained in BBS5 gene (family BSI-31).

Interpretation & conclusions: BBS10 gene mutations clustered in exon 2 of the gene suggesting the exon as a probable hotspot for mutations in Indian population. A cost- and time-effective strategy for the molecular diagnosis of BBS was designed based on these results.

Keywords: ARL6; BBS10; Bardet–Biedl syndrome; India.

MeSH terms

  • ADP-Ribosylation Factors / genetics*
  • Amino Acid Sequence
  • Bardet-Biedl Syndrome / diagnosis
  • Bardet-Biedl Syndrome / genetics*
  • Bardet-Biedl Syndrome / pathology
  • Chaperonins
  • Consanguinity
  • DNA Mutational Analysis
  • Exons / genetics
  • Female
  • Genetic Predisposition to Disease*
  • Group II Chaperonins / genetics*
  • Homozygote
  • Humans
  • India
  • Male
  • Mutation
  • Pedigree
  • Phenotype
  • Polymorphism, Single Nucleotide

Substances

  • BBS10 protein, human
  • Chaperonins
  • Group II Chaperonins
  • ARL6 protein, human
  • ADP-Ribosylation Factors