Structural dissection of sterol glycosyltransferase UGT51 from Saccharomyces cerevisiae for substrate specificity

J Struct Biol. 2018 Dec;204(3):371-379. doi: 10.1016/j.jsb.2018.11.001. Epub 2018 Nov 2.

Abstract

Sterol glycosyltransferases catalyze the formation of a variety of glycosylated sterol derivatives and are involved in producing a plethora of bioactive natural products. To understand the molecular mechanism of sterol glycosyltransferases, we determined crystal structures of a sterol glycosyltransferase UGT51 from Saccharomyces cerevisiae. The structures of the UGT51 and its complex with uridine diphosphate glucose (UDPG) were solved at resolutions of 2.77 Å and 1.9 Å, respectively. The structural analysis revealed that a long hydrophobic cavity, 9.2 Å in width and 17.6 Å in length located at the N-terminal domain of UGT51, is suitable for the accommodation of sterol acceptor substrates. Furthermore, a short, conserved sequence of S847-M851 was identified at the bottom of the hydrophobic cavity, which might be the steroid binding site and play an important role for the UGT51 catalytic specificity towards sterols. Molecular docking simulations indicated that changed unique interaction network in mutant M7_1 (S801A/L802A/V804A/K812A/E816K/S849A/N892D), with an 1800-fold activity improvement toward an unnatural substrate protopanaxadiol (PPD), might influence its substrate preference. This study reported the first sterol glycosyltransferase structure, providing a molecular blueprint for generating tailored sterol glycosyltransferases as potential catalytic elements in synthetic biology.

Keywords: Crystal structure; Saccharomyces cerevisiae; Sterol glycosyltransferase; Substrate specificity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Autophagy-Related Proteins / chemistry*
  • Autophagy-Related Proteins / genetics
  • Autophagy-Related Proteins / metabolism
  • Binding Sites / genetics
  • Biocatalysis
  • Catalytic Domain*
  • Crystallography, X-Ray
  • Glucosyltransferases / chemistry*
  • Glucosyltransferases / genetics
  • Glucosyltransferases / metabolism
  • Molecular Docking Simulation*
  • Mutation
  • Protein Binding
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Sterols / chemistry
  • Sterols / metabolism
  • Substrate Specificity
  • Uridine Diphosphate Glucose / chemistry
  • Uridine Diphosphate Glucose / metabolism

Substances

  • Autophagy-Related Proteins
  • Saccharomyces cerevisiae Proteins
  • Sterols
  • Atg26 protein, S cerevisiae
  • Glucosyltransferases
  • Uridine Diphosphate Glucose