Homozygous frameshift variant in NTNG2, encoding a synaptic cell adhesion molecule, in individuals with developmental delay, hypotonia, and autistic features

Neurogenetics. 2019 Oct;20(4):209-213. doi: 10.1007/s10048-019-00583-4. Epub 2019 Aug 2.

Abstract

Regulation of neuronal connectivity and synaptic communication are key to proper functioning of the brain. The Netrin-G subfamily and their cognate receptors are vertebrate-specific synaptic cell adhesion molecules with a role in synapse establishment and function, which seem to have co-evolved to contribute to higher brain functions. We identified a homozygous frameshift variant in NTNG2 (NM_032536.3: c.376dup), encoding Netrin-G2, in eight individuals from four families with global developmental delay, hypotonia, secondary microcephaly, and autistic features. Comparison of haplotypes established this as a founder variant. Previous studies showed that Ntng2-knockout mice have impaired visual, auditory, and motor coordination abilities required for demanding tasks, as well as possible spatial learning and memory deficits. Knockout of Ntng2 in a cellular model resulted in short neurites, and knockout of its trans-synaptic partner Ngl2/Lrrc4 in mice revealed autistic-like behavior and reduced NMDAR synaptic plasticity. The Ngl2/Lrrc4-knockout mouse phenotype was rescued by NMDAR activation, suggesting a mechanistic link to autism spectrum disorder. We thus propose NTNG2 as a candidate disease gene and provide further support for the involvement of Netrin-G2 in neuropsychiatric phenotypes.

Keywords: Autism spectrum disorder; Exome sequencing; NTNG2; Netrin family; Synaptic adhesion molecules.

MeSH terms

  • Autistic Disorder / complications
  • Autistic Disorder / genetics*
  • Cell Adhesion
  • Cell Adhesion Molecules / genetics
  • Child
  • Developmental Disabilities / complications
  • Developmental Disabilities / genetics*
  • Exome
  • Female
  • Frameshift Mutation*
  • GPI-Linked Proteins / genetics*
  • Haplotypes
  • Homozygote*
  • Humans
  • Male
  • Muscle Hypotonia / complications
  • Muscle Hypotonia / genetics*
  • Netrins / genetics*
  • Neuronal Plasticity
  • Pedigree
  • Phenotype
  • Synapses / metabolism

Substances

  • Cell Adhesion Molecules
  • GPI-Linked Proteins
  • NTNG2 protein, human
  • Netrins