Systematic identification of cancer cell vulnerabilities to natural killer cell-mediated immune surveillance

Elife. 2019 Aug 27:8:e47362. doi: 10.7554/eLife.47362.

Abstract

Only a subset of cancer patients respond to T-cell checkpoint inhibitors, highlighting the need for alternative immunotherapeutics. We performed CRISPR-Cas9 screens in a leukemia cell line to identify perturbations that enhance natural killer effector functions. Our screens defined critical components of the tumor-immune synapse and highlighted the importance of cancer cell interferon-γ signaling in modulating NK activity. Surprisingly, disrupting the ubiquitin ligase substrate adaptor DCAF15 strongly sensitized cancer cells to NK-mediated clearance. DCAF15 disruption induced an inflamed state in leukemic cells, including increased expression of lymphocyte costimulatory molecules. Proteomic and biochemical analysis revealed that cohesin complex members were endogenous client substrates of DCAF15. Genetic disruption of DCAF15 was phenocopied by treatment with indisulam, an anticancer drug that functions through DCAF15 engagement. In AML patients, reduced DCAF15 expression was associated with improved survival. These findings suggest that DCAF15 inhibition may have useful immunomodulatory properties in the treatment of myeloid neoplasms.

Keywords: CRISPR/CAS9 screening; DCAF15; PTPN2; cancer biology; human; natural killer cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Gene Expression Profiling
  • Gene Knockout Techniques
  • Humans
  • Intracellular Signaling Peptides and Proteins / genetics*
  • Killer Cells, Natural / immunology*
  • Leukemia, Myeloid, Acute / mortality
  • Leukemia, Myeloid, Acute / pathology*
  • Survival Analysis

Substances

  • DCAF15 protein, human
  • Intracellular Signaling Peptides and Proteins

Associated data

  • GEO/GSE134173

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.