The structure of the bacterial iron-catecholate transporter Fiu suggests that it imports substrates via a two-step mechanism

J Biol Chem. 2019 Dec 20;294(51):19523-19534. doi: 10.1074/jbc.RA119.011018. Epub 2019 Nov 11.

Abstract

The ferric iron uptake (Fiu) transporter from Escherichia coli functions in the transport of iron-catecholate complexes across the bacterial outer membrane, providing the bacterium with iron, which is essential for growth. Recently it has become clear that Fiu also represents a liability for E. coli because its activity allows import of antimicrobial compounds that mimic catecholate. This inadvertent import suggests the potential utility of antimicrobial catechol siderophore mimetics in managing bacterial infections. However, to fully exploit these compounds, a detailed understanding of the mechanism of transport through Fiu and related transporters is required. To address this question, we determined the crystal structure of Fiu at 2.1-2.9 Å and analyzed its function in E. coli Through analysis of the Fiuo crystal structure, in combination with in silico docking and mutagenesis, we provide insight into how Fiu and related transporters bind catecholate in a surface-exposed cavity. Moreover, through determination of the structure of Fiu in multiple crystal states, we revealed the presence of a large, selectively gated cavity in the interior of this transporter. This chamber is large enough to accommodate the Fiu substrate and may allow import of substrates via a two-step mechanism. This would avoid channel formation through the transporter and inadvertent import of toxic molecules. As Fiu and its homologs are the targets of substrate-mimicking antibiotics, these results may assist in the development of these compounds.

Keywords: Escherichia coli (E. coli); TonB-dependent transporter; X-ray crystallography; bacterial outer membrane; ferric iron uptake (Fiu); iron acquisition; membrane transport; outer membrane; protein structure; siderophore; solute uptake.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Catechols / chemistry
  • Computer Simulation
  • Crystallography, X-Ray
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Genetic Complementation Test
  • Ions*
  • Iron / metabolism*
  • Membrane Transport Proteins / chemistry*
  • Membrane Transport Proteins / genetics
  • Membrane Transport Proteins / metabolism
  • Mutagenesis
  • Mutation
  • Phylogeny
  • Receptors, Cell Surface / chemistry*
  • Receptors, Cell Surface / genetics
  • Receptors, Cell Surface / metabolism

Substances

  • Catechols
  • Escherichia coli Proteins
  • Ions
  • Membrane Transport Proteins
  • Receptors, Cell Surface
  • fiu protein, E coli
  • catechol-3,6-bis(methyleneiminodiacetic acid)
  • Iron
  • catechol

Associated data

  • PDB/5FP1
  • PDB/3U0D