MicroRNA governs bistable cell differentiation and lineage segregation via a noncanonical feedback

Mol Syst Biol. 2021 Apr;17(4):e9945. doi: 10.15252/msb.20209945.

Abstract

Positive feedback driven by transcriptional regulation has long been considered a key mechanism underlying cell lineage segregation during embryogenesis. Using the developing spinal cord as a paradigm, we found that canonical, transcription-driven feedback cannot explain robust lineage segregation of motor neuron subtypes marked by two cardinal factors, Hoxa5 and Hoxc8. We propose a feedback mechanism involving elementary microRNA-mRNA reaction circuits that differ from known feedback loop-like structures. Strikingly, we show that a wide range of biologically plausible post-transcriptional regulatory parameters are sufficient to generate bistable switches, a hallmark of positive feedback. Through mathematical analysis, we explain intuitively the hidden source of this feedback. Using embryonic stem cell differentiation and mouse genetics, we corroborate that microRNA-mRNA circuits govern tissue boundaries and hysteresis upon motor neuron differentiation with respect to transient morphogen signals. Our findings reveal a previously underappreciated feedback mechanism that may have widespread functions in cell fate decisions and tissue patterning.

Keywords: motor neuron differentiation; positive feedback loop; post-transcriptional regulation; single-cell RNA sequencing; tissue boundary formation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell Differentiation / genetics*
  • Cell Lineage / genetics*
  • Feedback, Physiological*
  • Female
  • Gene Expression Regulation
  • Gene Regulatory Networks
  • Homeodomain Proteins / metabolism
  • Kinetics
  • Male
  • Mice
  • Mice, Inbred C57BL
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • Models, Biological
  • Motor Neurons / metabolism*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA-Seq
  • Signal Transduction
  • Single-Cell Analysis
  • Spinal Cord / cytology*
  • Transcription Factors / metabolism
  • Transcription, Genetic
  • Tretinoin / metabolism

Substances

  • Homeodomain Proteins
  • Hoxa5 protein, mouse
  • Hoxc8 protein, mouse
  • MicroRNAs
  • RNA, Messenger
  • Transcription Factors
  • Tretinoin