Effects of PIM3 in prognosis of colon cancer

Clin Transl Oncol. 2021 Oct;23(10):2163-2170. doi: 10.1007/s12094-021-02624-7. Epub 2021 Apr 29.

Abstract

Purpose: PIM kinase is called proto-oncogene, but there are less research on PIM family in colon cancer. This study was designed to explore the prognosis of PIM3 in colon cancer.

Methods: In this study, we downloaded RNA-seq and clinical information of colon cancer from the Gene Expression Omnibus (GEO) database. Kaplan-Meier method was used for analyzing the impact of PIM3 on the survival of patients with colon cancer. Single-factor and multi-factor cox regression analysis were used for verifying the prognostic value of PIM3. Spearman correlation analysis was used for screening PIM3 related genes. Functional enrichment analysis was used for analyzing the biological functions and pathways in which PIM3 related genes may be involved. STRING online tools were used for building a co-expression network. Cytoscape was used for co-expression network visualization.

Results: Compared with the low expression group, the patients in the PIM3 high expression group lived longer time. Single-factor and multi-factor cox regression analysis indicated that PIM3 was an independent prognostic factor for colon cancer. Sixty-two PIM3 related genes were screened, and GO and KEGG enrichment analyses suggested that PIM3 related genes might be involved in the MAPK and WNT pathways. The co-expression network showed a strong correlation between PIM3 and MLKL, MYL5, PPP3R1 and other genes.

Conclusions: PIM3 is an independent prognostic factor of colon cancer and may be a target for the diagnosis and treatment of colon cancer.

Keywords: Colon cancer; Enrichment analysis; PIM3; Prognosis.

MeSH terms

  • Calcineurin / genetics
  • Colonic Neoplasms / genetics*
  • Colonic Neoplasms / mortality*
  • Colonic Neoplasms / pathology
  • Databases, Genetic
  • Gene Expression Profiling*
  • Humans
  • Kaplan-Meier Estimate
  • Mitogen-Activated Protein Kinase Kinases / metabolism
  • Prognosis
  • Promyelocytic Leukemia Protein / genetics
  • Protein Kinases / genetics
  • Protein Serine-Threonine Kinases / genetics*
  • Protein Serine-Threonine Kinases / physiology
  • Proto-Oncogene Proteins / genetics*
  • Proto-Oncogene Proteins / physiology
  • Regression Analysis
  • Wnt Signaling Pathway

Substances

  • Promyelocytic Leukemia Protein
  • Proto-Oncogene Proteins
  • PML protein, human
  • MLKL protein, human
  • Protein Kinases
  • PIM3 protein, human
  • Protein Serine-Threonine Kinases
  • Mitogen-Activated Protein Kinase Kinases
  • Calcineurin
  • PPP3R1 protein, human