Recurrent Fusion of the Genes for High-mobility Group AT-hook 2 (HMGA2) and Nuclear Receptor Co-repressor 2 (NCOR2) in Osteoclastic Giant Cell-rich Tumors of Bone

Cancer Genomics Proteomics. 2022 Mar-Apr;19(2):163-177. doi: 10.21873/cgp.20312.

Abstract

Background/aim: Chimeras involving the high-mobility group AT-hook 2 gene (HMGA2 in 12q14.3) have been found in lipomas and other benign mesenchymal tumors. We report here a fusion of HMGA2 with the nuclear receptor co-repressor 2 gene (NCOR2 in 12q24.31) repeatedly found in tumors of bone and the first cytogenetic investigation of this fusion.

Materials and methods: Six osteoclastic giant cell-rich tumors were investigated using G-banding, RNA sequencing, reverse transcription polymerase chain reaction, Sanger sequencing, and fluorescence in situ hybridization.

Results: Four tumors had structural chromosomal aberrations of 12q. The pathogenic variant c.103_104GG>AT (p.Gly35Met) in the H3.3 histone A gene was found in a tumor without 12q aberration. In-frame HMGA2-NCOR2 fusion transcripts were found in all tumors. In two cases, the presence of an HMGA2-NCOR2 fusion gene was confirmed by FISH on metaphase spreads.

Conclusion: Our results demonstrate that a subset of osteoclastic giant cell-rich tumors of bone are characterized by an HMGA2-NCOR2 fusion gene.

Keywords: Benign bone tumor; HMGA2; HMGA2–NCOR2 fusion gene; NCOR2; chromosomal aberrations; cytogenetics; giant cell tumor of bone; non-ossifying fibroma; osteoclastic giant cell-rich tumors of bone.

MeSH terms

  • Bone Neoplasms* / genetics
  • Bone Neoplasms* / pathology
  • Gene Fusion*
  • Giant Cell Tumors* / genetics
  • Giant Cell Tumors* / pathology
  • Giant Cells / pathology
  • HMGA2 Protein* / genetics
  • Humans
  • In Situ Hybridization, Fluorescence
  • Lipoma* / genetics
  • Lipoma* / pathology
  • Nuclear Receptor Co-Repressor 2* / genetics
  • Osteoclasts* / pathology

Substances

  • HMGA2 Protein
  • HMGA2 protein, human
  • NCOR2 protein, human
  • Nuclear Receptor Co-Repressor 2