Knockdown of GNL3L Alleviates the Progression of COPD Through Inhibiting the ATM/p53 Pathway

Int J Chron Obstruct Pulmon Dis. 2023 Nov 18:18:2645-2659. doi: 10.2147/COPD.S424431. eCollection 2023.

Abstract

Background: Chronic obstructive pulmonary disease (COPD) is a persistent chronic bronchitis disease, and its potential biomarkers have not been fully expounded. This study aims to explore the role of Guanine nucleotide binding protein like-3-like (GNL3L) in COPD induced by cigarette smoking (CS) in vivo.

Methods: Two microarray datasets of COPD were selected to screen differentially expressed genes (DEGs). A protein-protein interaction network was constructed to find hub genes. The COPD model was conducted using CS/LPS-induced mouse and cigarette smoke extract induced human bronchial epithelial cells. The pathological changes of lung tissue in mice were observed by hematoxylin-eosin staining and mean linear intercept. Cell viability was measured by CCK8 assay. Oxidative stress-related indicators, inflammatory factors, and ATM/p53 related-proteins were assessed using ELISA and Western blot.

Results: In this study, there were 110 common DEGs identified from the two datasets (GSE5058 and GSE38974). The key gene GNL3L was the optimal indicator to distinguish between samples with COPD and healthy controls. Through the in vivo and in vitro experiments, GNL3L knockdown significantly improved the pathological features of CS/LPS-induced COPD mice, promoted cell viability, inhibited inflammation (IL-1β, IL-8, and TNF-α), oxidative stress (MDA, SOD, and CAT), and ATM/p53 related-proteins (ATM, p53, and p21).

Conclusion: GNL3L is a novel biomarker of COPD, and knockdown of GNL3L participates in the progression of COPD by inhibiting ATM/p53 pathway.

Keywords: ATM/p53 pathway; COPD; GNL3L; hub genes.

MeSH terms

  • Animals
  • Ataxia Telangiectasia Mutated Proteins / genetics
  • Ataxia Telangiectasia Mutated Proteins / metabolism
  • GTP-Binding Proteins / metabolism
  • Humans
  • Lipopolysaccharides
  • Lung / metabolism
  • Mice
  • Nicotiana
  • Nuclear Proteins / genetics
  • Oxidative Stress
  • Pulmonary Disease, Chronic Obstructive* / metabolism
  • Tumor Suppressor Protein p53 / genetics

Substances

  • Ataxia Telangiectasia Mutated Proteins
  • ATM protein, human
  • GNL3L protein, human
  • GTP-Binding Proteins
  • Lipopolysaccharides
  • Nuclear Proteins
  • Tumor Suppressor Protein p53
  • GNL3L protein, mouse

Grants and funding

National Natural Science Foundation of China, No. 62071178; Health Commission of Hunan Province, No. A20182005; Natural Science Foundation of Changsha City of Hunan Province, No. kq2014009.