Identification of BANF1 as a novel prognostic biomarker in gastric cancer and validation via in-vitro and in-vivo experiments

Aging (Albany NY). 2024 Jan 22;16(2):1808-1828. doi: 10.18632/aging.205461. Epub 2024 Jan 22.

Abstract

Gastric cancer (GC) is a widespread malignancy characterized by a notably high incidence rate and an unfavorable prognosis. We conducted a meticulous analysis of GC high-throughput sequencing data downloaded from the Gene Expression Omnibus (GEO) repository to pinpoint distinctive genes associated with GC. Our investigation successfully identified three signature genes implicated in GC, with a specific focus on the barrier to autointegration factor 1 (BANF1), which exhibits elevated expression across various cancer types, including GC. Bioinformatic analysis has highlighted BANF1 as a prognostic indicator for patients with GC, with direct implications for immune cell infiltration. To gain a more comprehensive understanding of the significance of BANF1 in GC, we performed a series of in vitro experiments to confirm its high expression in GC tissues and cellular components. Intriguingly, the induction of BANF1 knockdown resulted in a marked attenuation of proliferation, migratory capacity, and invasive potential in GC cells. Moreover, our in vivo experiments using nude mouse models revealed a notable impediment in tumor growth following BANF1 knockdown. These insights underscore the feasibility of BANF1 as a novel therapeutic target for GC.

Keywords: GEO; TCGA; barrier to autointegration factor 1; gastric cancer; overall survival.

MeSH terms

  • Animals
  • Biomarkers
  • Computational Biology
  • DNA-Binding Proteins* / genetics
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Mice
  • Mice, Nude
  • Prognosis
  • Stomach Neoplasms* / genetics

Substances

  • Biomarkers
  • BANF1 protein, human
  • DNA-Binding Proteins