Deubiquitinase USP4 suppresses antitumor immunity by inhibiting IRF3 activation and tumor cell-intrinsic interferon response in colorectal cancer

Cancer Lett. 2024 May 1:589:216836. doi: 10.1016/j.canlet.2024.216836. Epub 2024 Mar 30.

Abstract

Despite the approval of immune checkpoint blockade (ICB) therapy for various tumor types, its effectiveness is limited to only approximately 15% of patients with microsatellite instability-high (MSI-H) or mismatch repair deficiency (dMMR) colorectal cancer (CRC). Approximately 80%-85% of CRC patients have a microsatellite stability (MSS) phenotype, which features a rare T-cell infiltration. Thus, elucidating the mechanisms underlying resistance to ICB in patients with MSS CRC is imperative. In this study, we demonstrate that ubiquitin-specific peptidase 4 (USP4) is upregulated in MSS CRC tumors and negatively regulates the immune response against tumors in CRC. Additionally, USP4 represses the cellular interferon (IFN) response and antigen presentation and impairs PRR signaling-mediated cell death. Mechanistically, USP4 impedes the nuclear localization of interferon regulator Factor 3 (IRF3) by deubiquitinating the K63-polyubiquitin chain of TRAF6 and IRF3. Knockdown of USP4 enhances the infiltration of T cells in CRC tumors and overcomes ICB resistance in an MC38 syngeneic mouse model. Moreover, published datasets revealed that patients showing higher USP4 expression exhibited decreased responsiveness to anti-PD-L1 therapy. These findings highlight an essential role of USP4 in the suppression of antitumor immunity in CRC.

Keywords: Colorectal cancer; IRF3; Immune suppression; Interferon response; USP4.

MeSH terms

  • Animals
  • Brain Neoplasms*
  • Colorectal Neoplasms* / drug therapy
  • Colorectal Neoplasms* / genetics
  • Colorectal Neoplasms* / metabolism
  • Deubiquitinating Enzymes / genetics
  • Humans
  • Interferon Regulatory Factor-3 / genetics
  • Interferons* / metabolism
  • Mice
  • Microsatellite Instability
  • Neoplastic Syndromes, Hereditary*
  • Ubiquitin-Specific Proteases / genetics
  • Ubiquitin-Specific Proteases / metabolism

Substances

  • Interferons
  • Deubiquitinating Enzymes
  • IRF3 protein, human
  • Interferon Regulatory Factor-3
  • USP4 protein, human
  • Ubiquitin-Specific Proteases

Supplementary concepts

  • Turcot syndrome