NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region

EMBO J. 1995 Jan 3;14(1):106-16. doi: 10.1002/j.1460-2075.1995.tb06980.x.

Abstract

The beta-like globin genes require the upstream locus control region (LCR) for proper expression. The active elements of the LCR coincide with strong erythroid-specific DNase I-hypersensitive sites (HSs). We have used 5' HS4 as a model to study the formation of these HSs. Previously, we identified a 101 bp element that is required for the formation of this HS. This element binds six proteins in vitro. We now report a mutational analysis of the HS4 HS-forming element (HSFE). This analysis indicates that binding sites for the hematopoietic transcription factors NF-E2 and GATA-1 are required for the formation of the characteristic chromatin structure of the HS following stable transfection into murine erythroleukemia cells. Similarly arranged NF-E2 and GATA binding sites are present in the other HSs of the human LCR, as well as in the homologous mouse and goat sequences and the chicken beta-globin enhancer. A combination of DNase I and micrococcal nuclease sensitivity assays indicates that the characteristic erythroid-specific hypersensitivity of HS4 to DNase I is the result of tissue-specific alterations in both nucleosome positioning and tertiary DNA structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Chromatin / metabolism*
  • DNA Mutational Analysis
  • DNA-Binding Proteins / metabolism*
  • Deoxyribonuclease I / metabolism
  • Erythroid-Specific DNA-Binding Factors
  • GATA1 Transcription Factor
  • Gene Expression Regulation
  • Globins / genetics*
  • Hematopoiesis / genetics
  • Humans
  • Leukemia, Erythroblastic, Acute
  • Mice
  • Models, Genetic
  • Molecular Sequence Data
  • NF-E2 Transcription Factor
  • NF-E2 Transcription Factor, p45 Subunit
  • Nucleosomes / metabolism
  • Protein Binding
  • Regulatory Sequences, Nucleic Acid / genetics*
  • Sequence Homology, Nucleic Acid
  • Transcription Factors / metabolism*
  • Tumor Cells, Cultured

Substances

  • Chromatin
  • DNA-Binding Proteins
  • Erythroid-Specific DNA-Binding Factors
  • GATA1 Transcription Factor
  • GATA1 protein, human
  • Gata1 protein, mouse
  • NF-E2 Transcription Factor
  • NF-E2 Transcription Factor, p45 Subunit
  • NFE2 protein, human
  • Nfe2 protein, mouse
  • Nucleosomes
  • Transcription Factors
  • Globins
  • Deoxyribonuclease I