Dinucleotide repeats in the human surfactant protein-B gene and respiratory-distress syndrome

Biochem J. 1995 Jan 15;305 ( Pt 2)(Pt 2):583-90. doi: 10.1042/bj3050583.

Abstract

Pulmonary surfactant, a lipoprotein complex, is essential for normal lung function, and deficiency of surfactant can result in respiratory-distress syndrome (RDS) in the prematurely born infant. Some studies have pointed towards a genetic contribution to the aetiology of RDS. Because the surfactant protein B (SP-B) is important for optimal surfactant function and because it is involved in the pathogenesis of pulmonary disease, we investigated the genetic variability of the SP-B gene in individuals with and without RDS. We identified a 2.5 kb BamHI polymorphism and studied its location, nature and frequency. We localized this polymorphism in the first half of intron 4 and found that it is derived by gain or loss in the number of copies of a motif that consists of two elements, a 20 bp conserved sequence and a variable number of CA dinucleotides. Variability in the number of motifs resulting from either deletion (in 55.3% of the cases with the variation) or insertion (44.7%) of motifs was observed in genomic DNAs from unrelated individuals. Analysis of 219 genomic DNAs from infants with (n = 82) and without (n = 137) RDS showed that this insertion/deletion appears with significantly higher frequency in the RDS population (29.3 as against 16.8%, P < 0.05).

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Black People
  • Cloning, Molecular
  • Deoxyribonuclease BamHI
  • Gene Frequency
  • Genetic Variation*
  • Genome, Human
  • Humans
  • Infant
  • Infant, Newborn
  • Introns / genetics
  • Molecular Sequence Data
  • Mutagenesis, Insertional
  • Polymerase Chain Reaction
  • Polymorphism, Restriction Fragment Length
  • Proteolipids / genetics*
  • Pulmonary Surfactants / deficiency
  • Pulmonary Surfactants / genetics*
  • Repetitive Sequences, Nucleic Acid / genetics*
  • Respiratory Distress Syndrome, Newborn / genetics*
  • Sequence Analysis, DNA
  • Sequence Deletion
  • Sequence Homology, Nucleic Acid
  • White People

Substances

  • Proteolipids
  • Pulmonary Surfactants
  • Deoxyribonuclease BamHI